Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq364176 100 6e-16 seq356745 98.7 2e-15 seq336898 95.1 2e-14 seq414080 91.5 3e-13 seq393589 91.5 3e-13 seq404197 86.0 1e-11 seq359707 86.0 1e-11 >seq364176 Length=18321 Score = 100 bits (110), Expect = 6e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| ||| | || || | ||| | ||| | ||| ||| ||| | || | |||| Sbjct 5338 ACCACCGTGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAG-TGTTGTGGTCAG 5396 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||| | Sbjct 5397 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAG 5456 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| | | | ||| | | ||| | Sbjct 5457 GAATTCCTTCCTTATCCTGGATCTTGGCGTTTACATTTTCTGTTGTATCCAAGGGTTCGA 5516 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || ||||| ||||| || || || | || || | || |||||||| || Sbjct 5517 CCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 5568 >seq356745 Length=38052 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||||| | || | |||| |||| ||| || |||||||||| Sbjct 19858 CTTTTGA-ATGTTGTAGTCAGACGAAGTATGGCCATCCTCCAGTTGCTTGCCAGCAAAGA 19916 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||| || || | ||| || |||||||||||||| || || || |||||||| Sbjct 19917 TCAGTCTTTGCTGGTTAGGAGGGATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTT 19976 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||| | |||||| | ||| || | ||||| ||||| || || || | || || || | Sbjct 19977 CTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTT-CCTGTCAGGGTCTTCATGA 20035 Query 192527 ATATCTGCATTTT 192539 | |||||||| || Sbjct 20036 AAATCTGCATCTT 20048 >seq336898 Length=33758 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| ||| | | ||| | ||| | ||||| ||| ||| || || || || |||| Sbjct 29876 ACCACCATGAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAG 29818 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | | | || || ||||| | Sbjct 29817 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTGTTTGCTGGTCAGGAG 29758 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGT-TATAGAATCTGACGATTCT 192486 | |||||||| || || || | || |||||||| | ||| | ||| || | ||| Sbjct 29757 GAATTCCTTCCTTGTCCTGGCTCTTGGCCTTTACATTTTTCTATTGTATCCGAGGGTTCA 29698 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || ||||| |||| | || || | || || | || |||||||| || Sbjct 29697 ACCTCGAGAGTGATGGCCATCCCTGTCAGGGTCTTCAAGAAAATCTGCATATT 29645 >seq414080 Length=5684 Score = 91.5 bits (100), Expect = 3e-13 Identities = 117/158 (74%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||| ||| || ||||||||||| | ||| || || ||||| || |||||||| | Sbjct 4680 CATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCT 4621 Query 192440 TATCTTGTATTTTATTTTTTACATTAGT-TATAGAATCTGACGATTCTACTTCTAGAGTA 192498 |||| || || || |||||||| | | | | |||||| | ||| ||||| ||||| Sbjct 4620 TATCCTGGATCTTGACCTTTACATTTTTCTGTTGTATCTGAGGGTTCAACTTCAAGAGTG 4561 Query 192499 ATGGT-TTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 ||||| | |||| || || || || || ||||||| Sbjct 4560 ATGGTCATCCCCAG--AAGGTCTTCATGAAAATCTGCA 4525 >seq393589 Length=19132 Score = 91.5 bits (100), Expect = 3e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||||| || || ||| |||| |||| ||| || |||||||||| Sbjct 8032 CTTTTGA-ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 7974 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||| || || ||||| | |||||||| || || || || || |||||||| Sbjct 7973 TCAGTCTTTGCTGGTCAGGGGAAATTCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 7914 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||| | ||| | | ||| || | ||||| ||||| || || || | || || || | Sbjct 7913 CTATTGTATCCAAGGGTTCAACCTTGAGAGTGATGGTCTT-CCTGTCAGGGTCTTCATGA 7855 Query 192527 ATATCTGCA 192535 | ||||||| Sbjct 7854 AAATCTGCA 7846 >seq404197 Length=65104 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 49827 GCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 49886 ||||| ||| |||||||||||||| || |||| |||||| ||| || | || Sbjct 52773 GCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCG 52714 Query 49887 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 49946 ||||| | ||||| || || ||||| ||||| ||||||||| || ||||||||| || Sbjct 52713 GGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATT 52654 Query 49947 CCCTCGACACACGCAAATGCTA 49968 || || || ||||| |||| Sbjct 52653 CCTTCCACTGCGGCAAAGGCTA 52632 >seq359707 Length=5412 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| || ||||| | || | || | |||| |||||| ||| | |||||||| Sbjct 2566 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGCTGTAATCAGAA 2625 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || | |||| |||| ||||| || |||||||| | ||||| || ||||| || Sbjct 2626 GGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 2685 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||||||||| || || || || || || | || | || || || || Sbjct 2686 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTTGATGGTGTCACTGGACTCCACC 2745 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || ||||| || ||||| || || || | || ||||||||||| Sbjct 2746 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTT 2795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979164052889400