Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq356745 102 1e-16 seq397823 98.7 2e-15 >seq356745 Length=38052 Score = 102 bits (112), Expect = 1e-16 Identities = 118/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| ||| || |||||||| || | ||| || |||| ||| || |||||||||||| Sbjct 19892 TCCTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTTAGGAGGGATTCCTTCTTTA 19951 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || |||||||| ||| |||||||| | ||| || | ||||| ||| Sbjct 19952 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATG 20011 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || || | || || ||||| |||||||| || Sbjct 20012 GTCTT-CCTGTCAGGGTCTTCATGAAAATCTGCATCTT 20048 >seq397823 Length=5921 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || ||||| | | ||||| || | | ||| | ||| | ||| || | | || Sbjct 1657 TTTCTTAGTACCAGCACGAAGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGACTGTT 1716 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || ||||||||||| |||| || || Sbjct 1717 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCCTTGCTG 1776 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 || || || ||| |||| |||||||| || || |||||||| | | ||||| || Sbjct 1777 GTTAGAAGGAATTACTTCCTTATCTTGGATCTTGGCGTTTACATTTTCTGTTGTATCCGA 1836 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || || ||||| ||||| || || || | | || | || |||||||| Sbjct 1837 GGGTTCGACCTCGAGAGTGATGGTCTTCCCTGTCAGGATCTTCACAAAAATCTGCAT 1893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 900367698295200