Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq366024 165 2e-35 seq378433 86.0 2e-11 >seq366024 Length=42324 Score = 165 bits (182), Expect = 2e-35 Identities = 388/573 (68%), Gaps = 22/573 (4%) Strand=Plus/Plus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || || || || || || | || ||||||||||||||||| ||| | | | Sbjct 17470 TTTGTCATCTTTCCTATCAAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCT 17529 Query 133136 TTATTTTGGACTTCAACTGAA---GTAGATTTATCCAAAGAC--CCAGCCCACTGGGAAG 133190 | ||||||| || ||||| || || | ||||| ||| ||| |||||||||| Sbjct 17530 TCCTTTTGGA---CAGCTGAAGAGGTGGACCTTTCCAAGGACATTCAG--CACTGGGAAG 17584 Query 133191 CCCTTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTG 133250 |||| | || || | | |||| ||||| ||| | || || ||||| || |||| Sbjct 17585 CCCTGAAGCCTGAGGAGAGATATTTCATTTCGCATATTCTGGCTTTCTTTGCAGCAAGTG 17644 Query 133251 ATGGTATTGTTCTTGAAAATTT--AGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGA 133308 |||| || || |||||| || ||| || ||||| ||||||||| | | || Sbjct 17645 ATGGCATAGTAAATGAAAACTTGGTGGAGCA--GTTTAGCCAAGAAGTTCAGATTACGGA 17702 Query 133309 AGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCT--ATCACATAT 133366 ||||||| || ||||| | | ||||| |||||||| ||||||||| | ||| Sbjct 17703 AGCCCGTTGTTTCTATGGCTTCCTAATTGCCATGGAAAACATCCATTCTGAAATGTATAG 17762 Query 133367 TCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCC 133426 ||| ||| ||||| |||||||| |||||| || | | | | || |||||||| Sbjct 17763 TCTCCTC--ATTGACACTTACATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAACGCT 17820 Query 133427 ATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGA 133485 ||| | || | | |||||| | || ||||| | || ||||| | |||||| ||| Sbjct 17821 ATT-GAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGTGCTGGATCGGGGA 17879 Query 133486 CAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttttt 133545 ||| || | | || ||| |||| || ||||||| ||| || || || || || Sbjct 17880 CAAAGAGGCTACGTATGGAGAACGTTTCGTAGCCTTTGCTGCAGTGGAAGGAATCTTCTT 17939 Query 133546 CAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGT 133604 |||| | || ||| || || || ||||| ||||| || ||| | |||| || || Sbjct 17940 TTCTGGTTC-TTTTGCATCGATATTCTGGCTCAAAAAACGAGGTCTGATACCCGGCCTCA 17998 Query 133605 GTTTTTCTAACGAACTTATTTCAAGGGACGAGG 133637 ||||| || ||||||||| || ||||||| Sbjct 17999 CATTTTCCAATGAACTTATTAGCAGAGACGAGG 18031 >seq378433 Length=24221 Score = 86.0 bits (94), Expect = 2e-11 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || |||||||| || || || || ||||||| ||||| ||||| Sbjct 14896 ACCAGTCTCAGCAGTCTTGACAGCTGTGTCGATGAGCCCCTCACGACCCCCCATGGCATG 14837 Query 302667 GAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725 |||||| | ||| || ||| || || | | ||||| |||| || || ||||| Sbjct 14836 GAAGAAGAACTCGGTGGG-CGTGAGGCCGGCCAGGTAGGAGTTCTCCACAAAGCCACGGC 14778 Query 302726 CCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785 ||| ||| || || ||| | ||||| ||||| |||| || || | || | | Sbjct 14777 TCTCAGGCCCATAATCATCTTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAACCCAAACG 14718 Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 |||| ||||| || || ||||||||||| || Sbjct 14717 GGATCCGCTTGCCCTCCACGTTCTGCTGCCC 14687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1463870151074628