Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq356745 109 5e-19 seq393589 100 3e-16 seq397823 98.7 9e-16 seq336898 95.1 1e-14 >seq356745 Length=38052 Score = 109 bits (120), Expect = 5e-19 Identities = 146/199 (73%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || || || || || || || || || || ||| | || ||| | | Sbjct 20046 GATGCAGATTTTCATGAAGACCCTGACAGG-AAGACCATCACTCTCAAGGTTGAACCTTC 19988 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 19987 AGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATCCCTCCTAACCA 19928 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATA 24881 ||| | |||||||||| || || || |||||||| | | | || | ||| || || | Sbjct 19927 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAGGA-TGGCCATACTTCGTCTGACTACA 19869 Query 24882 ACATTCAAAAGGAATCGAC 24900 ||||||||||||| || || Sbjct 19868 ACATTCAAAAGGAGTCCAC 19850 >seq393589 Length=19132 Score = 100 bits (110), Expect = 3e-16 Identities = 152/215 (71%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 24705 TGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCG 24764 ||||||| || || || || || || || || || || || ||| | || ||| || | Sbjct 7846 TGCAGATTTTCATGAAGACCCTGACAGG-AAGACCATCACTCTCAAGGTTGAACCCTTGG 7904 Query 24765 ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAAC 24824 | ||| |||||| ||||| |||||||| ||||| |||||||| | || || || | Sbjct 7905 ATACAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTTCCCCTGACCAGC 7964 Query 24825 AACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACA 24884 || | |||||||||| || || || ||||| ||| | | |||| || || |||| Sbjct 7965 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACA 8024 Query 24885 TTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||||| || | || || | |||||| || Sbjct 8025 TTCAAAAGGAGTCCGCTCTTCATCTTGTGTTGAGA 8059 >seq397823 Length=5921 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || | || || || || || || || ||||| || ||| || | Sbjct 1894 GATGCAGATTTTTGTGAAGATCCTGACAGGGAAGACCATCACTCTCGAGGTCGAACCCTC 1835 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| ||||| ||||| ||||||||||| || |||| ||| ||| | | || Sbjct 1834 GGATACAACAGAAAATGTAAACGCCAAGATCCAAGATAAGGAAGTAATTCCTTCTAACCA 1775 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||| ||||| || || || ||||| ||| | | |||| || || || Sbjct 1774 GCAAGGATTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 1715 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 || ||||||||| || || || || | ||||| || Sbjct 1714 CAGTCAAAAGGAGTCCACTCTTCATCTTCTGTTGAGA 1678 >seq336898 Length=33758 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || | | || || ||||| || ||| || | Sbjct 29648 ATGCAGATTTTCTTGAAGACCCTGACAGGGATGGCCATCACTCTCGAGGTTGAACCCTCG 29707 Query 24764 GACACAGTAGAAACG-GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| |||| ||| ||||| |||||||| ||||| || || Sbjct 29708 GATACAATAGAAAAATGTAAAGGCCAAGAGCCAGGACAAGGAAGGAATTCCTCCTGACCA 29767 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| |||||||||| || || || ||||| ||| | | |||| || || || Sbjct 29768 GCAAACACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 29827 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 |||||||||||| || || || || |||| Sbjct 29828 CATTCAAAAGGAGTCTACTCTTCATCTTG 29856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447527516948320