Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq258579 109 4e-19 seq364176 95.1 8e-15 seq418776 89.7 3e-13 seq366847 89.7 3e-13 seq411564 84.2 1e-11 seq359707 84.2 1e-11 seq129591 84.2 1e-11 >seq258579 Length=20613 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| || || |||| | | |||||| |||| ||| ||||| || | | || || Sbjct 19183 CTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATACGTCCA 19124 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||||||||| || || |||||||||| ||||||||| | || | || |||||| Sbjct 19123 TCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTG 19064 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | |||| | || || ||||| |||| || ||| Sbjct 19063 TCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTCAAGAGTGATG 19004 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| |||||||| || || |||||||| Sbjct 19003 GTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 18969 >seq364176 Length=18321 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| || || |||| ||| |||||| ||| |||| | ||| || | | || || Sbjct 5351 CTCAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTGGTCAGACAAAGTACGTCCA 5410 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||||||||| || || |||||||||| ||||||||| | || | || ||||| Sbjct 5411 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTA 5470 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | || | | || || ||||| || | || ||| Sbjct 5471 TCCTGGATCTTGGCGTTTACATTTTCTGTTGTATCCAAGGGTTCGACCTCGAGAGTGATG 5530 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| |||||||| || || |||||||| Sbjct 5531 GTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 5565 >seq418776 Length=96061 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTG-AATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 || ||||||| | ||||||||||| |||| || ||| ||||| ||||| || || || Sbjct 55105 CCACCCCTCAGACGGAGGACCAGGTGCAATGTTG-ACTCTTTCTGGATGTTGTAATCAGA 55047 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 || ||| |||| ||||| || || || || ||||| || | |||| ||| | || Sbjct 55046 AAGAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTAGTCAGGGGG 54987 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCG 34927 | || ||||| || | || || || || || || || | ||| ||| ||| Sbjct 54986 GATGCCTTCCTTATCCTGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGACTCC 54929 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | ||| |||||||| | | |||||||| || ||||||||||| Sbjct 54928 ACCTCCAGGGTGATGGTCTTGCNNNTCAGGGTCTTCACGAAGATCTGCAT 54879 >seq366847 Length=8421 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||| ||| ||||| ||||| | ||| || || | | |||| Sbjct 1835 AGCACCAAGTGTAGGGTGGACTCTTTCTGGATGTTGTTGTCTGAGAG--TTCTACCATCT 1778 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||| || || || || ||||| | |||||||| || | | ||||||||||| Sbjct 1777 TCCCACTGTTTGCCCATAAAAATCAGATGCTGCTGGTCAGGCAGGATACCCTCCTTGTCT 1718 Query 34886 TTTATTTTTTGTTTGACGGATGC--TATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| ||||| || | ||| || ||| ||| ||| || |||| ||| ||| Sbjct 1717 TGGATTTTGGCCTTGAC--ATTCTTTATGGAGTCACTGGTCTCCACCTCAAGGGTGGTGG 1660 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| ||| |||||||||| Sbjct 1659 TCTTGCCTGTCAGGGTCTTCACACAGATCTGCAT 1626 >seq411564 Length=61085 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||| ||||| ||||| || || || | |||| | || Sbjct 40458 AGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCGGCCGTCT 40517 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC--ACCCCCTCCTTGT 34883 ||||| || || || || ||||| || | |||||||| | || | || ||||| | Sbjct 40518 TCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGGGATGCCTTCCTTAT 40577 Query 34884 CGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 | | || || || || || || || | ||| ||| ||| || || | ||| || Sbjct 40578 CCTGGATCTTGGCCTTCAC--ATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 40635 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| ||||| |||||||| | ||||||||||| Sbjct 40636 GGTCTTGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 40671 >seq359707 Length=5412 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| ||| ||||| ||| | || || || Sbjct 2566 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGCTGTAATCAGAA 2625 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | || | |||| ||||| || || || || ||||| || | |||||||| | || Sbjct 2626 GGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 2685 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || || || | || || || ||| | || || | ||| ||| ||| | Sbjct 2686 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACG--TTCTTGATGGTGTCACTGGACTCCA 2743 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || | |||||| || ||||||||||| Sbjct 2744 CCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2792 >seq129591 Length=11435 Score = 84.2 bits (92), Expect = 1e-11 Identities = 149/214 (70%), Gaps = 5/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| |||||| || ||||| || |||||||| || || | || || | Sbjct 4880 AGCACCAAGTGTATGGTGGATTCTTTCTGGATATTATAGTCTGAGAGAGTACGGCCACCC 4821 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || | || || ||||| | || |||| | || | | |||| |||| Sbjct 4820 TC-AGCTGTTTGTCTGCAAAAATCAGACTGTGTTGGTGTGGCAGGATGTCCTCAGTGTCT 4762 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 || ||||| |||||| || || || | || || || ||| |||| || |||| Sbjct 4761 TTGATTTTGGCTTTGAC--ATTCTCAATGGTGACACTGAGCTTGACCTCAAGAGTGATGG 4704 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||| | |||||||| |||||||||||||| Sbjct 4703 TCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 4670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324019928193836