Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq393589 91.5 1e-13
seq414080 84.2 2e-11
seq356745 84.2 2e-11
seq336898 84.2 2e-11
seq359707 82.4 6e-11
>seq393589
Length=19132
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/212 (70%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| | ||| || ||||||||||| || || | | || || |||
Sbjct 8056 CAACACAAGATGAAGAGCGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 7997
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | |||| ||||||||| || || | ||| || || |||||
Sbjct 7996 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAAATTCCTTCCTTGTC 7937
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| |||||| || || | |||| || | ||||| || ||
Sbjct 7936 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTTGAGAGTGATGGT 7877
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCA 29785
|| || || | ||| || | || |||||||
Sbjct 7876 CTT-CCTGTCAGGGTCTTCATGAAAATCTGCA 7846
>seq414080
Length=5684
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/205 (70%), Gaps = 8/205 (4%)
Strand=Plus/Minus
Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642
|||||| ||||| || ||||||||||| || || | || | ||| || |||||
Sbjct 4723 ATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACATCCATCTTCCAGTTG 4668
Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702
||||||||| | |||| ||||||||| || || ||||| || || || || || | ||
Sbjct 4667 CTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTT 4608
Query 29703 TTGTTTGACA-GTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT-TTTGCCA 29760
|| ||| ||||| || || || |||| ||||||||||| || || | |||
Sbjct 4607 GACCTTTACATTTTTCTGTTGTATCTGAGGGTTCAACTTCAAGAGTGATGGTCATCCCCA 4548
Query 29761 GTTAAGGTTTTAACAAATATCTGCA 29785
| ||||| || | || |||||||
Sbjct 4547 G--AAGGTCTTCATGAAAATCTGCA 4525
>seq356745
Length=38052
Score = 84.2 bits (92), Expect = 2e-11
Identities = 140/201 (70%), Gaps = 1/201 (0%)
Strand=Plus/Plus
Query 29589 CGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCC 29648
|||||| || ||||||||||| || || | || | ||| || ||||| |||||
Sbjct 19849 CGTGGACTCCTTTTGAATGTTGTAGTCAGACGAAGTATGGCCATCCTCCAGTTGCTTGCC 19908
Query 29649 AGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTT 29708
|||| | |||| ||||||||| | || || || || ||||| || || | || ||
Sbjct 19909 AGCAAAGATCAGTCTTTGCTGGTTAGGAGGGATTCCTTCTTTATCCTGGATCTTGGCCTT 19968
Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768
||| |||||| || || ||| |||| || | ||||| || || || || || | |||
Sbjct 19969 TACATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTT-CCTGTCAGGGT 20027
Query 29769 TTTAACAAATATCTGCATTTT 29789
|| | || |||||||| ||
Sbjct 20028 CTTCATGAAAATCTGCATCTT 20048
>seq336898
Length=33758
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/208 (69%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642
|||||| || || || ||||||||||| || || | | || || ||| || |||||
Sbjct 29852 ATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTG 29793
Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702
||||||||| | |||| | ||||||| || || ||||| || || ||||| || ||
Sbjct 29792 CTTGCCAGCAAAGATCAGTGTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGCTCTT 29733
Query 29703 TTGTTTGACA-GTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761
|| ||| |||||| || || || |||| || || ||||| || | | || |
Sbjct 29732 GGCCTTTACATTTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGGCCATCCCTG 29673
Query 29762 TTAAGGTTTTAACAAATATCTGCATTTT 29789
| | ||| || | || |||||||| ||
Sbjct 29672 TCAGGGTCTTCAAGAAAATCTGCATATT 29645
>seq359707
Length=5412
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||||||| ||| || |||| || || || || ||||| || ||| | ||||| | |
Sbjct 2566 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGCTGTAATCAGAA 2625
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
||| | ||| || || |||||||| ||| | || | || ||||| || || ||
Sbjct 2626 GGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 2685
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| || ||||| || || | || || || | | | |||||| || ||
Sbjct 2686 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTTGATGGTGTCACTGGACTCCACC 2745
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || || || |||||||| ||||| || || || |||||||||||
Sbjct 2746 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTT 2795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 383240579843604
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |