Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq393589 91.5 1e-13 seq414080 84.2 2e-11 seq356745 84.2 2e-11 seq336898 84.2 2e-11 seq359707 82.4 6e-11 >seq393589 Length=19132 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| | ||| || ||||||||||| || || | | || || ||| Sbjct 8056 CAACACAAGATGAAGAGCGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 7997 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||||||||| || || | ||| || || ||||| Sbjct 7996 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAAATTCCTTCCTTGTC 7937 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || | |||| || | ||||| || || Sbjct 7936 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTTGAGAGTGATGGT 7877 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCA 29785 || || || | ||| || | || ||||||| Sbjct 7876 CTT-CCTGTCAGGGTCTTCATGAAAATCTGCA 7846 >seq414080 Length=5684 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/205 (70%), Gaps = 8/205 (4%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| ||||| || ||||||||||| || || | || | ||| || ||||| Sbjct 4723 ATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACATCCATCTTCCAGTTG 4668 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | |||| ||||||||| || || ||||| || || || || || | || Sbjct 4667 CTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTT 4608 Query 29703 TTGTTTGACA-GTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT-TTTGCCA 29760 || ||| ||||| || || || |||| ||||||||||| || || | ||| Sbjct 4607 GACCTTTACATTTTTCTGTTGTATCTGAGGGTTCAACTTCAAGAGTGATGGTCATCCCCA 4548 Query 29761 GTTAAGGTTTTAACAAATATCTGCA 29785 | ||||| || | || ||||||| Sbjct 4547 G--AAGGTCTTCATGAAAATCTGCA 4525 >seq356745 Length=38052 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 29589 CGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCC 29648 |||||| || ||||||||||| || || | || | ||| || ||||| ||||| Sbjct 19849 CGTGGACTCCTTTTGAATGTTGTAGTCAGACGAAGTATGGCCATCCTCCAGTTGCTTGCC 19908 Query 29649 AGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTT 29708 |||| | |||| ||||||||| | || || || || ||||| || || | || || Sbjct 19909 AGCAAAGATCAGTCTTTGCTGGTTAGGAGGGATTCCTTCTTTATCCTGGATCTTGGCCTT 19968 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| |||||| || || ||| |||| || | ||||| || || || || || | ||| Sbjct 19969 TACATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTT-CCTGTCAGGGT 20027 Query 29769 TTTAACAAATATCTGCATTTT 29789 || | || |||||||| || Sbjct 20028 CTTCATGAAAATCTGCATCTT 20048 >seq336898 Length=33758 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| || || || ||||||||||| || || | | || || ||| || ||||| Sbjct 29852 ATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTG 29793 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | |||| | ||||||| || || ||||| || || ||||| || || Sbjct 29792 CTTGCCAGCAAAGATCAGTGTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGCTCTT 29733 Query 29703 TTGTTTGACA-GTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761 || ||| |||||| || || || |||| || || ||||| || | | || | Sbjct 29732 GGCCTTTACATTTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGGCCATCCCTG 29673 Query 29762 TTAAGGTTTTAACAAATATCTGCATTTT 29789 | | ||| || | || |||||||| || Sbjct 29672 TCAGGGTCTTCAAGAAAATCTGCATATT 29645 >seq359707 Length=5412 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||| || |||| || || || || ||||| || ||| | ||||| | | Sbjct 2566 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGCTGTAATCAGAA 2625 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 ||| | ||| || || |||||||| ||| | || | || ||||| || || || Sbjct 2626 GGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 2685 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||| || || | || || || | | | |||||| || || Sbjct 2686 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTTGATGGTGTCACTGGACTCCACC 2745 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || |||||||| ||||| || || || ||||||||||| Sbjct 2746 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTT 2795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383240579843604