Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq319347 262 3e-64
seq394555 109 4e-18
seq415575 104 2e-16
seq361425 96.9 3e-14
seq32641 95.1 9e-14
>seq319347
Length=14646
Score = 262 bits (290), Expect = 3e-64
Identities = 958/1488 (64%), Gaps = 39/1488 (3%)
Strand=Plus/Minus
Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476
||||| || |||| ||||| || || ||||||||||| | |||||| |||||||||||
Sbjct 9495 TTATCTGCAGCAGAGACATTGAGGATGCCATTGGCATCAATATCAAAAGTGACTTCAATA 9436
Query 281477 TGAGGGACCCCTCTC-TGAG--------CAGGTGGGATCCCTTCCAAATTAAATGTTCCC 281527
||||| || || | || | |||| || || ||| | | ||| | ||
Sbjct 9435 TGAGGAACACCACGGGTGGGGGGGCCGGCAGGAGGTATGCCTGTGAGTTCAAACTTGCCA 9376
Query 281528 AGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTA 281585
|| || ||||| || || | | ||||| || ||| || || |||| |||
Sbjct 9375 AGCAGGTTGTTATCCTTGGTCATGGCATGCTCACCTTCATAAACCTGAATGAGTACACTG 9316
Query 281586 CAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTG 281644
| || || || || || |||||||| |||| || | || ||||| || |||
Sbjct 9315 --GGCTGGTTGTCCGAGTAGGTTGTAAAGG-TCTGCATCTGCTTGGTGGGAATGGTGGTG 9259
Query 281645 TTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGA 281704
|| | | || | ||||| | |||||||| ||||| | ||||| |||||||||
Sbjct 9258 TTGCACTTGATGAGGACAGTCATGACTCCACCAGCAGTTTCAATTCCAAGGGAAAGAGGA 9199
Query 281705 GTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCT 281764
|||||||| | || | | | ||||| |||||| | | ||| ||||| |||
Sbjct 9198 GTGACATCCAACAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCCAGATAGAATGGCT 9139
Query 281765 GCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT 281824
|| || | ||| |||||||| |||||||| || ||||| || | | | ||| |||| |
Sbjct 9138 GCCTGGACAGCTGCACCATAAGCAACAGCCTCGTCAGGGTTGATGCTCTTATTCAGTTCT 9079
Query 281825 TTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCC 281883
|| || ||||| | | ||||||| ||| | ||| || || || | ||| || ||
Sbjct 9078 TTCCCGTTGAAGGAGTCCTGTAGAAGTT-TCTGAATCTTGGGGATGCGGGTTGAACCACC 9020
Query 281884 AACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAA--CTTTT 281941
|| | | ||| ||||| | ||| || || || || || | |||| ||| ||||
Sbjct 9019 CACCAGGAGAATATCATGTATCTGAGACTTGTCTAGCTTGGCATCCCCCAAAGGGCTTTC 8960
Query 281942 TCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTA 282001
|| || || || || | | |||| ||| | | |||||||| ||| || |
Sbjct 8959 TCCACAGGGTCCAGTGTGCCACGGAACAGGTCAGCATTCAGTTCTTCAAATCAGGCACGG 8900
Query 282002 GTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGA 282061
|||| | | || | || |||||||| | | |||||| ||||| | | ||
Sbjct 8899 GTAATTGAGGTATAGAAGTCGATTCCTTCATAGAGGAAATCAATCTCAATACTGGCCTGG 8840
Query 282062 GTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC- 282120
| ||||| || | || |||||||| ||||| || || | || || | ||
Sbjct 8839 ATGCTGGAAGAGAGAGTGCGCTTAGCACGCTCACAAGCAGTACGAAGGTGACGGACAGCC 8780
Query 282121 ---TTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCA 282177
|||| || | |||| || | || | || |||||| ||| ||| | | |
Sbjct 8779 CTCTTTTTCTCACTGATG----TCCTTCTTGTGCTTGTGCTTGAATTCTGCAATAAA--A 8726
Query 282178 TGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAAT--------TTAGTATTTCCTG 282227
|| | || | | || ||||| ||||| || || || | |||| ||| |
Sbjct 8725 TGGTTGACCATCTGGTTGTCAAAGTCTTCTCCACCTAAGCAGAGAAGTGGGTATCTCCAG 8666
Query 282228 ACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTC 282287
|||| ||| || | || | |||| | |||| || | | | |||||| || |
Sbjct 8665 CTGTAGATCTGACCTCAAAGATTCCACCCTCAATAGTGAGGACTGACACATCAAAAGTGC 8606
Query 282288 CACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCAT 282347
||||||| | |||||| || || ||||| ||||| | ||||| || | ||||
Sbjct 8605 CACCACCTAAATCAAAGATCAGCACATTTCTTTCTGCTCCAACCTTTTTGTCTAAGCCAT 8546
Query 282348 ACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTC 282407
| |||| |||||| ||||||||||| || || |||| | ||||| || ||||||||
Sbjct 8545 AGGCAATAGCAGCTGCAGTTGGTTCGTTGATGATTCGAAGTACATTGAGCCCAGCAATAG 8486
Query 282408 TTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAA 282467
|||| |||||||| || || || | || ||||| ||||| || | || || || | ||
Sbjct 8485 TTCCAGCATCTTTGGTAGCCTGACGCTGAGAATCATTAAAGTAAGTGGGTACTGTGACAA 8426
Query 282468 CGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAA 282527
| |||| || || || |||| || || |||| ||| |||| || | ||||
Sbjct 8425 CAGCATGGGTAACAGTCTTCCCAAGGTAGGCTTCTGCTATTTCCTTCACCTTTGTCAAAA 8366
Query 282528 TCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAA 282587
|||| ||||| | | |||||| || | || | || | ||| ||||| ||
Sbjct 8365 TCATGGATGACACCTCCTCTGGATAAAAACTTTTTGTCTCTCCCTTGTATTCTACTTGAA 8306
Query 282588 AATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAA 282647
| || | || |||| | | | || ||||||| |||||||| || || |
Sbjct 8305 CCTTAGGCCTGCCTGCATCATTCACCATCATGAAAGGCCAATGCTTCATATCAGACTGGA 8246
Query 282648 CACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTG 282707
| |||| ||| || ||||| | ||||| |||||||||| | ||||| |
Sbjct 8245 AAACAGCATCATCAAATCTTCGTCCAATGAGGCGTTTGGCATCAAAAACCATGTTGGTGG 8186
Query 282708 GATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATG 282767
|||| | |||| |||| | || || ||||| ||| ||| |||| || || ||||| |
Sbjct 8185 GATTCATTGCAACTTGGTTCTTTGCAGCATCACCAGTCAATCGTTCGGTATCAGTAAAGG 8126
Query 282768 AAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCAT 282827
||||| ||| || || | || || |||||| | ||||| ||||| || || || |
Sbjct 8125 TGACATAGCTTGGGGTAGTTTGGTTCCCCTGATCACTGGCAATTATTTCCACCTTTCCGT 8066
Query 282828 TTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAA 282875
|| | ||||| |||||| | | || || || | | |||| ||||
Sbjct 8065 GCTGGAAGACACCCACACAAGAATAGGTGGTGCCAAGACCAATGCCAA 8018
>seq394555
Length=21707
Score = 109 bits (120), Expect = 4e-18
Identities = 105/135 (78%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356
||||| || || ||||||||||||| ||||||||||| || ||| | || |||||| |
Sbjct 20570 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 20629
Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416
|| |||| ||||| | || || |||||||| |||||||||||||| | |||||| |
Sbjct 20630 GTGGTTGGGAGAGACAAGTACGGGGTTTTCCCTCTTAGAGGAAAACTGCTTAATGTTCGA 20689
Query 400417 GATGCTAGTCCTAAA 400431
|| ||| || ||||
Sbjct 20690 GAAGCTTCTCATAAA 20704
>seq415575
Length=19035
Score = 104 bits (114), Expect = 2e-16
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || | ||||| |||| ||||||||||||||| ||||| ||||| || | ||
Sbjct 1606 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATAATCCTAAGTACG 1547
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| || |||||||| |||| |||||||| || || || | || ||||| ||||| ||
Sbjct 1546 TTGAGCCCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAATCATTAAAGTAA 1487
Query 282452 GCAGGAACAGTAATAACGGCAT 282473
|| || || || | ||| ||||
Sbjct 1486 GCGGGTACTGTGACAACAGCAT 1465
>seq361425
Length=9997
Score = 96.9 bits (106), Expect = 3e-14
Identities = 152/215 (71%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 282662 AAATCT-CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGC 282720
|||||| | ||||| | ||||| |||||||||| || ||||| ||||| | |||| |
Sbjct 4 AAATCTTCGTCCAATGAGGCGTTTGGCATCAAAAACCGTGTTGGTAGGATTCATTGCAAC 63
Query 282721 TTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGG 282780
||| | ||| | ||||| || |||| ||| || || ||||| | ||||| ||
Sbjct 64 TTGGTTCTTG-CAGCATCACCGATCAATCGTTTGGTATCAGTAAAGGCGACATAGCTAGG 122
Query 282781 AGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC 282840
|| || | || ||||||||||| ||| | ||||| || || || | || | |||||
Sbjct 123 TGTAGTTTGGTTCCCTTGATCATTGGCAGTTATTTCCACCTTTCCGTGCTGGAAGACACC 182
Query 282841 TACACAACTAAAAGTTGTTCCTAAATCAATACCAA 282875
|||||| | | || || || | |||||| ||||
Sbjct 183 CACACAAGAATAGGTGGTGCCAAGATCAATGCCAA 217
>seq32641
Length=16243
Score = 95.1 bits (104), Expect = 9e-14
Identities = 97/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235
|||| |||| || ||||| ||||| ||||| ||||||||| | || || | || ||
Sbjct 9026 TGTAATAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCCAAGTCAT 9085
Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295
||||||||| ||||| ||| | || ||| ||||| || || |||||||| || || ||
Sbjct 9086 TCATTACGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGGGCTGGCCG 9145
Query 131296 TGATGGA 131302
|||||||
Sbjct 9146 TGATGGA 9152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3719939280622344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |