Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq319347 262 3e-64 seq394555 109 4e-18 seq415575 104 2e-16 seq361425 96.9 3e-14 seq32641 95.1 9e-14 >seq319347 Length=14646 Score = 262 bits (290), Expect = 3e-64 Identities = 958/1488 (64%), Gaps = 39/1488 (3%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 ||||| || |||| ||||| || || ||||||||||| | |||||| ||||||||||| Sbjct 9495 TTATCTGCAGCAGAGACATTGAGGATGCCATTGGCATCAATATCAAAAGTGACTTCAATA 9436 Query 281477 TGAGGGACCCCTCTC-TGAG--------CAGGTGGGATCCCTTCCAAATTAAATGTTCCC 281527 ||||| || || | || | |||| || || ||| | | ||| | || Sbjct 9435 TGAGGAACACCACGGGTGGGGGGGCCGGCAGGAGGTATGCCTGTGAGTTCAAACTTGCCA 9376 Query 281528 AGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTA 281585 || || ||||| || || | | ||||| || ||| || || |||| ||| Sbjct 9375 AGCAGGTTGTTATCCTTGGTCATGGCATGCTCACCTTCATAAACCTGAATGAGTACACTG 9316 Query 281586 CAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTG 281644 | || || || || || |||||||| |||| || | || ||||| || ||| Sbjct 9315 --GGCTGGTTGTCCGAGTAGGTTGTAAAGG-TCTGCATCTGCTTGGTGGGAATGGTGGTG 9259 Query 281645 TTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGA 281704 || | | || | ||||| | |||||||| ||||| | ||||| ||||||||| Sbjct 9258 TTGCACTTGATGAGGACAGTCATGACTCCACCAGCAGTTTCAATTCCAAGGGAAAGAGGA 9199 Query 281705 GTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCT 281764 |||||||| | || | | | ||||| |||||| | | ||| ||||| ||| Sbjct 9198 GTGACATCCAACAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCCAGATAGAATGGCT 9139 Query 281765 GCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT 281824 || || | ||| |||||||| |||||||| || ||||| || | | | ||| |||| | Sbjct 9138 GCCTGGACAGCTGCACCATAAGCAACAGCCTCGTCAGGGTTGATGCTCTTATTCAGTTCT 9079 Query 281825 TTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCC 281883 || || ||||| | | ||||||| ||| | ||| || || || | ||| || || Sbjct 9078 TTCCCGTTGAAGGAGTCCTGTAGAAGTT-TCTGAATCTTGGGGATGCGGGTTGAACCACC 9020 Query 281884 AACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAA--CTTTT 281941 || | | ||| ||||| | ||| || || || || || | |||| ||| |||| Sbjct 9019 CACCAGGAGAATATCATGTATCTGAGACTTGTCTAGCTTGGCATCCCCCAAAGGGCTTTC 8960 Query 281942 TCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTA 282001 || || || || || | | |||| ||| | | |||||||| ||| || | Sbjct 8959 TCCACAGGGTCCAGTGTGCCACGGAACAGGTCAGCATTCAGTTCTTCAAATCAGGCACGG 8900 Query 282002 GTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGA 282061 |||| | | || | || |||||||| | | |||||| ||||| | | || Sbjct 8899 GTAATTGAGGTATAGAAGTCGATTCCTTCATAGAGGAAATCAATCTCAATACTGGCCTGG 8840 Query 282062 GTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC- 282120 | ||||| || | || |||||||| ||||| || || | || || | || Sbjct 8839 ATGCTGGAAGAGAGAGTGCGCTTAGCACGCTCACAAGCAGTACGAAGGTGACGGACAGCC 8780 Query 282121 ---TTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCA 282177 |||| || | |||| || | || | || |||||| ||| ||| | | | Sbjct 8779 CTCTTTTTCTCACTGATG----TCCTTCTTGTGCTTGTGCTTGAATTCTGCAATAAA--A 8726 Query 282178 TGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAAT--------TTAGTATTTCCTG 282227 || | || | | || ||||| ||||| || || || | |||| ||| | Sbjct 8725 TGGTTGACCATCTGGTTGTCAAAGTCTTCTCCACCTAAGCAGAGAAGTGGGTATCTCCAG 8666 Query 282228 ACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTC 282287 |||| ||| || | || | |||| | |||| || | | | |||||| || | Sbjct 8665 CTGTAGATCTGACCTCAAAGATTCCACCCTCAATAGTGAGGACTGACACATCAAAAGTGC 8606 Query 282288 CACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCAT 282347 ||||||| | |||||| || || ||||| ||||| | ||||| || | |||| Sbjct 8605 CACCACCTAAATCAAAGATCAGCACATTTCTTTCTGCTCCAACCTTTTTGTCTAAGCCAT 8546 Query 282348 ACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTC 282407 | |||| |||||| ||||||||||| || || |||| | ||||| || |||||||| Sbjct 8545 AGGCAATAGCAGCTGCAGTTGGTTCGTTGATGATTCGAAGTACATTGAGCCCAGCAATAG 8486 Query 282408 TTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAA 282467 |||| |||||||| || || || | || ||||| ||||| || | || || || | || Sbjct 8485 TTCCAGCATCTTTGGTAGCCTGACGCTGAGAATCATTAAAGTAAGTGGGTACTGTGACAA 8426 Query 282468 CGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAA 282527 | |||| || || || |||| || || |||| ||| |||| || | |||| Sbjct 8425 CAGCATGGGTAACAGTCTTCCCAAGGTAGGCTTCTGCTATTTCCTTCACCTTTGTCAAAA 8366 Query 282528 TCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAA 282587 |||| ||||| | | |||||| || | || | || | ||| ||||| || Sbjct 8365 TCATGGATGACACCTCCTCTGGATAAAAACTTTTTGTCTCTCCCTTGTATTCTACTTGAA 8306 Query 282588 AATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAA 282647 | || | || |||| | | | || ||||||| |||||||| || || | Sbjct 8305 CCTTAGGCCTGCCTGCATCATTCACCATCATGAAAGGCCAATGCTTCATATCAGACTGGA 8246 Query 282648 CACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTG 282707 | |||| ||| || ||||| | ||||| |||||||||| | ||||| | Sbjct 8245 AAACAGCATCATCAAATCTTCGTCCAATGAGGCGTTTGGCATCAAAAACCATGTTGGTGG 8186 Query 282708 GATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATG 282767 |||| | |||| |||| | || || ||||| ||| ||| |||| || || ||||| | Sbjct 8185 GATTCATTGCAACTTGGTTCTTTGCAGCATCACCAGTCAATCGTTCGGTATCAGTAAAGG 8126 Query 282768 AAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCAT 282827 ||||| ||| || || | || || |||||| | ||||| ||||| || || || | Sbjct 8125 TGACATAGCTTGGGGTAGTTTGGTTCCCCTGATCACTGGCAATTATTTCCACCTTTCCGT 8066 Query 282828 TTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAA 282875 || | ||||| |||||| | | || || || | | |||| |||| Sbjct 8065 GCTGGAAGACACCCACACAAGAATAGGTGGTGCCAAGACCAATGCCAA 8018 >seq394555 Length=21707 Score = 109 bits (120), Expect = 4e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || ||||||||||||| ||||||||||| || ||| | || |||||| | Sbjct 20570 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 20629 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||| ||||| | || || |||||||| |||||||||||||| | |||||| | Sbjct 20630 GTGGTTGGGAGAGACAAGTACGGGGTTTTCCCTCTTAGAGGAAAACTGCTTAATGTTCGA 20689 Query 400417 GATGCTAGTCCTAAA 400431 || ||| || |||| Sbjct 20690 GAAGCTTCTCATAAA 20704 >seq415575 Length=19035 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||||||||| ||||| ||||| || | || Sbjct 1606 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATAATCCTAAGTACG 1547 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| |||| |||||||| || || || | || ||||| ||||| || Sbjct 1546 TTGAGCCCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAATCATTAAAGTAA 1487 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || || || | ||| |||| Sbjct 1486 GCGGGTACTGTGACAACAGCAT 1465 >seq361425 Length=9997 Score = 96.9 bits (106), Expect = 3e-14 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 282662 AAATCT-CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGC 282720 |||||| | ||||| | ||||| |||||||||| || ||||| ||||| | |||| | Sbjct 4 AAATCTTCGTCCAATGAGGCGTTTGGCATCAAAAACCGTGTTGGTAGGATTCATTGCAAC 63 Query 282721 TTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGG 282780 ||| | ||| | ||||| || |||| ||| || || ||||| | ||||| || Sbjct 64 TTGGTTCTTG-CAGCATCACCGATCAATCGTTTGGTATCAGTAAAGGCGACATAGCTAGG 122 Query 282781 AGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC 282840 || || | || ||||||||||| ||| | ||||| || || || | || | ||||| Sbjct 123 TGTAGTTTGGTTCCCTTGATCATTGGCAGTTATTTCCACCTTTCCGTGCTGGAAGACACC 182 Query 282841 TACACAACTAAAAGTTGTTCCTAAATCAATACCAA 282875 |||||| | | || || || | |||||| |||| Sbjct 183 CACACAAGAATAGGTGGTGCCAAGATCAATGCCAA 217 >seq32641 Length=16243 Score = 95.1 bits (104), Expect = 9e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 |||| |||| || ||||| ||||| ||||| ||||||||| | || || | || || Sbjct 9026 TGTAATAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCCAAGTCAT 9085 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||||||||| ||||| ||| | || ||| ||||| || || |||||||| || || || Sbjct 9086 TCATTACGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGGGCTGGCCG 9145 Query 131296 TGATGGA 131302 ||||||| Sbjct 9146 TGATGGA 9152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3719939280622344