Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq381406 156 4e-33 seq325509 98.7 9e-16 >seq381406 Length=23923 Score = 156 bits (172), Expect = 4e-33 Identities = 607/946 (64%), Gaps = 45/946 (5%) Strand=Plus/Plus Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 ||||||||||||||| | || || |||||||||||||| || || || ||||| Sbjct 13522 AAGACCCTAGCTGCCATAGGGACAGGATTTGACTGTGCCAGCAACACTGAAATCCAGTTG 13581 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 || ||| || || | | || ||||| | | ||| ||||||| ||| || Sbjct 13582 GCACAGGGTCTCGGGGTGCCTCCTGAGAGGATTTTCTATGCAAATCCTTATAAACAAGTG 13641 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | || || || | | |||||| | |||||||||||||||||||| Sbjct 13642 TCTCAGATTAAATACGCTGCCAATAATGGAGTCCAGACGATGACTTTTGATAGTGAAGTT 13701 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||| | | ||| ||| | || | | || ||| |||| || ||||| | Sbjct 13702 GAGTTGATGAAAGTTGCCAGGGCACATCCAAAGGCCAAGTTGGTTTTGCGGATTGCCACG 13761 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | || |||||||| ||||| || | | || ||||| Sbjct 13762 GATGATTCCAAAGCAGTCTATAGCCTCAGTGTCAAATTTGGTGCCACACTCAAAACCAGC 13821 Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683 | || || ||| ||| ||| | ||| | || || || || |||||||||||| Sbjct 13822 AGGCTTCTTCTGGAACGGGCGAAAGAGCTAGATATTGATGTCATTGGTGTCAGCTTCCAC 13881 Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743 ||||| ||||| | | ||| || | | | || | ||||| |||| ||| | | Sbjct 13882 GTGGGAAGTGGTTCTACTGATCCAGGGACCTTCATGCAGGCCATCTCTGATGCCCGCTGT 13941 Query 20744 GCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGCG 20801 | |||||| | || ||||| | || || ||||||| || | || |||||||| | Sbjct 13942 GTCTTTGACAT--GCGAGCTGAGGTTGGTTTCAACATGTATCTGCTTGACATTGGTGGTG 13999 Query 20802 GCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCATTA 20858 ||||| || ||||| |||| || ||| | ||||| || || | || || | Sbjct 14000 GCTTT-CCTGGATC--TGAGGATGTAAAGCTTAAATTTGAAGAGATCACCAGTGTAATCA 14056 Query 20859 ACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCTG 20918 || | || ||||| | | |||||||| || | ||| ||| || | ||| || | Sbjct 14057 ACCCAGCGTTGGACAAGTATTTTCCATTAGACTCTGGAGTGAGAATCATAGCTGAGCCAG 14116 Query 20919 GCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAA--GTG 20976 | || ||||| | | | || || | || |||| | | | | ||||| ||||| | Sbjct 14117 GAAGATACTATGTTGCATCAGCTTTCACGCTAGCAATTAATATCATTGCCAAAAAACTCG 14176 Query 20977 TGTTGAAG--ACA------CTC-----CTGGAGA---------TAAAAAG---TTTATGT 21011 | || ||| ||| ||| || ||| | || || ||||||| Sbjct 14177 TATTAAAGGAACAGACAGGCTCTGATGATGAAGATGAGTTGAGTGAACAGACATTTATGT 14236 Query 21012 ATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGTC 21071 ||||||| |||||||| || ||||| || |||||||| | || | ||||| | Sbjct 14237 ATTATGTGAATGATGGAGTATATGGATCATTCAACTGCATCCTCTTCGATCATGCACACG 14296 Query 21072 CTATGCCTATGCTGCTTAAAGAA-AAACGCCTTGAAGACAAAGACTATGTTTC---TAGC 21127 | |||| | |||| |||| | || | ||| || | ||| ||| |||| Sbjct 14297 TGAAGCCTCTTCTGC----AGAAGAGACCCAAACCAGATAAGAAGTATTATTCATGTAGC 14352 Query 21128 ATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAG 21187 || ||||| || | ||| |||||| | ||| ||| |||| | || | | | |||| || Sbjct 14353 ATCTGGGGACCAACCTGTGATGGCCTGGATCGCACTGTTGAACGCTATAACTTGCCCAAG 14412 Query 21188 CTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 | || ||||| || ||| | | |||||||||||||| ||||||| Sbjct 14413 ATGCATGTGGGTGATTGGATGTTCTTTGAAAACATGGGTGCTTACA 14458 >seq325509 Length=6024 Score = 98.7 bits (108), Expect = 9e-16 Identities = 131/177 (74%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | ||| |||||| | ||| |||||||| |||| ||| | || Sbjct 439 TCCAGCATCTGGGGACCGACCTGTGATGGCCTGGATCGCATTGTTGAGCGCTGTAACTTG 380 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || ||| | || |||||||| ||| | | |||||||||||||| ||||||| || | Sbjct 379 CCCGAGATGCATGTGGGCGATTGGATGCTCTTTGAAAACATGGGTGCTTACA-CTGTCGC 321 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTCAG 21296 ||| |||| || || || || || ||| || | || | | ||||||| || |||| Sbjct 320 TGCTGCTTCCACTTTCAATGGATT-CCAGAGACCGACCATCTACTATGTGATGTCAG 265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461103618601920