Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq394374 271 7e-68 >seq394374 Length=35152 Score = 271 bits (300), Expect = 7e-68 Identities = 497/719 (69%), Gaps = 52/719 (7%) Strand=Plus/Plus Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGCA 1130 ||||||| ||||||||||||||||||| ||||||| |||| || | | | |||||||| Sbjct 32220 CCACAGCCCTAGCTTCTGGTCTGAAAA-GAGTAGGCTTCTTCTGGGGGCAATGGAAGGCA 32278 Query 1131 TTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGTT 1190 ||||||||||| ||||| ||||| |||||| | |||||||||| || || | || |||| Sbjct 32279 TTTTAAAGAAATGGCTTGGAAAAGAAATCTCGAGGGCACTTACGTAGTCATTCAAGAGTT 32338 Query 1191 TTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTGTATGTCCCGTGGTAG----T 1246 | ||| ||| || ||| ||| |||||| |||| |||| | || || ||| | Sbjct 32339 TCTCAAACGAGGACCGTAATTCCTTGATTATAGCTTGTTGTTTATCTGGTCCTAGCATAT 32398 Query 1247 GGATGGCCG--TGGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGCAAGCC 1304 | |||| |||||||| ||||||||||| ||||||||||| ||||||||||||| || Sbjct 32399 AGGGTGCCGTATGGGAGGACAGCAAGGCTCCCGAACAGCAGAGAAGGAACAGGGCAAACC 32458 Query 1305 CTGAAGATTTTGTAAAAATAGAGTAATGCCCACACACCCCCACCTGCCCCATACCTTAAC 1364 | |||| || | ||| | || || || | || ||| || ||| | | Sbjct 32459 TGGCAGATCCTGGAGAAAGAAGGTGAT--CCCGGGAGGAGCAGAGGCCGCACACCCCAGC 32516 Query 1365 CTG--CCCAAGCTTTCACCACCGAAGCTG-TGCCG------GACTGAGCCCCATCCAGTC 1415 | | ||| |||| ||| | | || | || || | ||||||||| ||||| | Sbjct 32517 CCGCCCCCCGGCTTCAACCGCTCAGGCCGTTGTCGAGCAGTGGCTGAGCCCC-TCCAGCC 32575 Query 1416 TTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGTAGGACCTAT 1475 || |||| ||||| | || || |||| | ||| | ||| | | ||| Sbjct 32576 TTCCTCTCTGTCTGGTGAGACCCGACTGTGCCCCGC---------GGCCGCGGCACCCCG 32626 Query 1476 CGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTGGCAACAGCTG 1535 | |||||| | |||| || || | |||||||||||| || | || ||||||||| Sbjct 32627 TGGTACCTGCGTGGGAGACCATGGTGGGAGAGAGCGAG---GCTGTTTCAGCAACAGCTC 32683 Query 1536 CTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTAGTTGTAAG 1595 || || |||||||||||| || | || ||| | |||||||||||| | | | || Sbjct 32684 CTGGACCCAGATGTGCTCGCCATGGTCTTCAGGAGC--TATATAAAGGGCCAATGGCGAG 32741 Query 1596 ---GAGGAGCACTAAAAGTACCGCCCACGGTAAAGTCATTACT-----------CAGAAA 1641 |||| ||| | | | || |||| || ||| |||||||| |||||| Sbjct 32742 GAAGAGGGGCAATCACTCTCCCACCCATGGCAAAATCATTACTCAGCTTTTTCCCAGAAA 32801 Query 1642 ACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAAA---TGA 1697 ||| ||||||| | ||||| | | ||| | |||||| |||| |||||||| ||| Sbjct 32802 ACACTTTCAAAAGTCTGCCACCCAAGGCTGGGTGAAAGCAGGGCTGGAAGGAAATGCTGA 32861 Query 1698 AGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGGGCACCCACA 1756 |||||||| ||| |||||||| || ||| || | || ||||||| | ||||| |||| Sbjct 32862 GGTTACCCTCAAGGTGGGCAGACGCCTGATTCAGTACAGATACACA-CAGGCACACACA 32919 Score = 178 bits (196), Expect = 1e-39 Identities = 341/495 (69%), Gaps = 41/495 (8%) Strand=Plus/Plus Query 287 AACAACTTACAGCAGAATTCTCGTACACAGAGGGCACTAA---------TCTTAAGGCTC 337 || |||| |||||||||||||| || || | |||| | | |||||||| Sbjct 30554 AATAACTCACAGCAGAATTCTCACACTTAGCTGTCACTCATTTTTTTTTTTTTAAGGCTT 30613 Query 338 TTTGCATTCCTGCCATT-CAAAAGGAACAGGGTCAACCACATGGTCTTCAGTGACCT--- 393 |||||| |||||||| |||||||| |||| ||||||| |||| || | |||||| Sbjct 30614 CATGCATTTCTGCCATTCCAAAAGGACCAGGTTCAACCAGATGGCTTTAAATGACCTACT 30673 Query 394 ----TCCAGGCTTCAGTG---CCCACTAATTTCAGGCACTTTGAAAACATTTCTAAAACA 446 ||||| |||| || || ||||||| |||| ||||||| ||| ||||| | Sbjct 30674 GGGCTCCAGCGTTCAATGATTTAAACAGATTTCAGACACTCTGAAAACTTTTTTAAAATA 30733 Query 447 CACTGTATGAACACtttttt---ttGATAGCTGTCTGTAGGCATAGAAA------TGTCT 497 || ||||| ||||||| || | |||| |||||||||| ||||| | ||| Sbjct 30734 GACACGATGAA-GCTTTTTTACATTTAAAGCTCTCTGTAGGCACAGAAACCTTTGTTTCT 30792 Query 498 GGTGCGCGTTGCAATTCAAGTTTTTTGAGATGGTCCATGACATCAGTAAAACT--ATTTG 555 ||| | || | ||||| ||||| |||||||||| |||| || | |||| | || Sbjct 30793 GGTTCATGTCGAAATTCGAGTTTACTGAGATGGTCTGTGACGGCA--ACAACTTGAGTTT 30850 Query 556 TGTCATTAAAAAATGATTTGATGGCTCTAAAATAAGGCAGGATGGCTGAACTGTTGATGT 615 || || ||| ||| |||||| ||||| | ||||||| | ||||||| | || | Sbjct 30851 CGTTATGGAAAGATGGTTTGATCGCTCTGCAGTAAGGCAAG-TGGCTGAGCAGTCCTCGC 30909 Query 616 TGTGTGGTGGCTGGGGGCTCACAGAAAAGCACTGCATGCGGCACGTGCATGATTTTACTA 675 ||| ||| |||||||| ||| || || || |||| || || || || || Sbjct 30910 TGTATGGCAGCTGGGGGTTCAGAGCGAAATACGGCATCTGGTAC-TGGCTGCGTTCCGGC 30968 Query 676 ATCCCTTATTCTCTTTCTGCTTCTGTG---GAAGGAGAGGAAATGGGTGAGCATTAGTGT 732 | ||| |||||| ||||| ||||| |||||| |||| ||||||||| ||||| | Sbjct 30969 ACTCCT--CTCTCTTCCTGCTGCTGTGTAACAAGGAGGGGAAGTGGGTGAGCGTTAGTTT 31026 Query 733 TGTAAAGCAGTCAGA 747 || ||| ||| |||| Sbjct 31027 TGCAAAACAGCCAGA 31041 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 166 CCACACACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTT 225 || || |||| | | |||||| ||| ||| ||||||| ||| |||||||||||| ||| Sbjct 30243 CCCCAAACAAAACGCCAAACAGAGTATGAGACAAATTCAATATCATTTATTAAATAGTTT 30302 Query 226 TCAAGGGCTTCTTTAAGAAGCATTAACAATCT 257 |||||||| || ||| |||||||||||||| Sbjct 30303 CCAAGGGCTCCTCCAAGGAGCATTAACAATCT 30334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 436249643992000