Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq364176 141 2e-28 seq411564 140 6e-28 seq418776 138 2e-27 seq258579 136 8e-27 seq336898 131 3e-25 seq397823 127 4e-24 seq393589 127 4e-24 seq356745 125 1e-23 seq168090 123 5e-23 seq414080 107 4e-18 seq408215 96.9 7e-15 seq376890 95.1 2e-14 seq129591 95.1 2e-14 seq391508 87.8 4e-12 >seq364176 Length=18321 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || | || | ||||| | | | | || ||||| ||||| Sbjct 5363 TGAAGAGTGGACTCCTTTTGAGTGTTGTGGTCAGACAAAGTACGTCCATCTTCCAGTTGC 5422 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||||||| || || ||||| |||||||||||||| || ||||| Sbjct 5423 TTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 5482 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| | ||||| ||||| || || | ||| || ||||| || ||| Sbjct 5483 GCGTTTACATTTTCTGTTGTATCCAAGGGTTCGACCTCGAGAGTGATGGTCTTCCCCGTC 5542 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 5543 AGGGTCTTCACGAAAATCTGCAT 5565 >seq411564 Length=61085 Score = 140 bits (154), Expect = 6e-28 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| || || | |||||| ||||| |||||||| || || |||||||| Sbjct 40443 CCACCCCTTAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 40502 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | |||||||| || ||||| || |||||||| || || || || || || || Sbjct 40503 ATAGTGCGGCCGTCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 40562 Query 82704 --ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 || ||||||||||| || ||||| || || ||||| | || || ||| | || || | Sbjct 40563 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCA 40622 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| |||| ||||| | || |||||||| Sbjct 40623 CCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 40671 >seq418776 Length=96061 Score = 138 bits (152), Expect = 2e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| || || | ||||| || || |||||||| || || |||||||| Sbjct 55105 CCACCCCTCAGACGGAGGACCAGGTGCAATGTTGACTCTTTCTGGATGTTGTAATCAGAA 55046 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || ||||| || |||||||| || || || | || || || Sbjct 55045 AGAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTAGTCAGGGGGG 54986 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || ||||| || || || ||| | | || || Sbjct 54985 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGACTCCACC 54926 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||||| ||| ||||| || || |||||||| Sbjct 54925 TCCAGGGTGATGGTCTTGCNNNTCAGGGTCTTCACGAAGATCTGCAT 54879 >seq258579 Length=20613 Score = 136 bits (150), Expect = 8e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || |||| || || || || | || || ||||| | ||| | || ||||| ||||| Sbjct 19171 TGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATACGTCCATCTTCCAGTTGC 19112 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| |||||||| || || ||||| ||||||||||| || || ||||| Sbjct 19111 TTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGATCTTG 19052 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || | ||| ||||| || || | ||| || ||||| || ||| Sbjct 19051 GCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTCAAGAGTGATGGTCTTCCCCGTC 18992 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 18991 AGGGTCTTCACGAAAATCTGCAT 18969 >seq336898 Length=33758 Score = 131 bits (144), Expect = 3e-25 Identities = 152/204 (75%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || |||||||| || || || || || || ||||| | | | | || ||||| ||||| Sbjct 29851 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGC 29792 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| ||| |||| || || ||||| ||||||||||| || || |||| Sbjct 29791 TTGCCAGCAAAGATCAGTGTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGCTCTTG 29732 Query 82728 GCTTTTACA-TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || |||||| ||||| || ||||| ||||| || || | ||| || | | | ||||| Sbjct 29731 GCCTTTACATTTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGGCCATCCCTGT 29672 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 || ||||| | || |||||||| Sbjct 29671 CAGGGTCTTCAAGAAAATCTGCAT 29648 >seq397823 Length=5921 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || | || || ||||| | | | | || ||||| ||||| Sbjct 1691 TGAAGAGTGGACTCCTTTTGACTGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGC 1750 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || | || ||| || | | ||| ||| ||||||||||||| ||||| Sbjct 1751 TTGCCAGCAAAAATCAATCCTTGCTGGTTAGAAGGAATTACTTCCTTATCTTGGATCTTG 1810 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| | ||||| ||||| || || | ||| || ||||| |||||| Sbjct 1811 GCGTTTACATTTTCTGTTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTCCCTGTC 1870 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | |||| ||||| |||||||| Sbjct 1871 AGGATCTTCACAAAAATCTGCAT 1893 >seq393589 Length=19132 Score = 127 bits (140), Expect = 4e-24 Identities = 150/202 (74%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || |||| || || || || || || || ||||| | | | | || ||||| ||||| Sbjct 8046 TGAAGAGCGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGC 7987 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||||||| || || || | ||||||||||| || || ||||| Sbjct 7986 TTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAAATTCCTTCCTTGTCCTGGATCTTG 7927 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || ||||| ||||| || | | ||| || ||||| |||||| Sbjct 7926 GCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTTGAGAGTGATGGTCTT-CCTGTC 7868 Query 82788 AACGTCTTTACAAATATCTGCA 82809 | ||||| | || ||||||| Sbjct 7867 AGGGTCTTCATGAAAATCTGCA 7846 >seq356745 Length=38052 Score = 125 bits (138), Expect = 1e-23 Identities = 149/198 (75%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA-CCGTCTTCTAGTTGTTTTCC 82672 || || || || || || || || ||||| ||| | | || || || ||||| || || Sbjct 19850 GTGGACTCCTTTTGAATGTTGTAGTCAGAC-GAAGTATGGCCATCCTCCAGTTGCTTGCC 19908 Query 82673 AGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTT 82732 ||||||||| |||||||| || | ||||| |||||||| ||||| || ||||| || || Sbjct 19909 AGCAAAGATCAGTCTTTGCTGGTTAGGAGGGATTCCTTCTTTATCCTGGATCTTGGCCTT 19968 Query 82733 TACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGT 82792 ||||||||| || ||||| |||||| || | | ||| || ||||| ||||||| || Sbjct 19969 TACATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTT-CCTGTCAGGGT 20027 Query 82793 CTTTACAAATATCTGCAT 82810 ||| | || |||||||| Sbjct 20028 CTTCATGAAAATCTGCAT 20045 >seq168090 Length=9538 Score = 123 bits (136), Expect = 5e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 |||||| || || |||||||| || || | |||||| ||| | || ||||| || || Sbjct 8507 GTGCAGGGTCGACTCTTTCTGGATGTTGTGATCAGAAAGAGTGTGGCCATCTTCCAGATG 8566 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || || |||||||| || || || || || ||||| || ||||||| ||| || ||||| Sbjct 8567 CTTGCCTGCAAAGATGAGCCTCTGCTGTTCGGGAGG-ATGCCTTCCTCATCCTGGATCTT 8625 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || ||||| || | ||| | || ||||| |||| || || ||||||| || Sbjct 8626 GGCCTTCACATTCCTGATGATGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCTGGT 8685 Query 82787 CAACGTCTTTACAAATATCTGCATT 82811 ||||||||| || || || |||||| Sbjct 8686 CAACGTCTTCACGAAGATTTGCATT 8710 >seq414080 Length=5684 Score = 107 bits (118), Expect = 4e-18 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || ||||||||||| |||||||| || || ||||| ||||||||| Sbjct 4681 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 4622 Query 82713 TTATCTTGAATCTTTGCTTTTACA-TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 ||||| || ||||| | |||||| ||||| | ||||| ||||| ||||| | ||| Sbjct 4621 TTATCCTGGATCTTGACCTTTACATTTTTCTGTTGTATCTGAGGGTTCAACTTCAAGAGT 4562 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 || ||| | || || ||||| | || ||||||| Sbjct 4561 GATGGTCAT-CCCCAGAAGGTCTTCATGAAAATCTGCA 4525 >seq408215 Length=16836 Score = 96.9 bits (106), Expect = 7e-15 Identities = 122/168 (73%), Gaps = 5/168 (3%) Strand=Plus/Plus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| ||| |||||||| || || || || || || |||||||| || || ||| Sbjct 3392 TGGTGGTACTTTATTTCTAAAGGCATTGAGTATTTGGACACAGTGTTTTTTATCCTGAGG 3451 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || ||| || || || || | |||||||||||||| | ||| |||||||| || Sbjct 3452 AAGAAGAACAACCAAGTCTCCTTCCTTCACGTATATCATCACTGTACAATGTTTACATTG 3511 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGG-----AGGTCAAGCATTTT 60317 | ||| | || ||||| ||| | || || ||| ||||||||| Sbjct 3512 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACAGGGTAAGCATTTT 3559 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368 |||||||||||||||| ||| |||||||||| |||||||| |||||||| | || || | Sbjct 4602 AAGCATTTTTCGGAGCCCAGCTGAATTCCTTCATCCATGTGATTATGTACTCATACTACG 4661 Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTA 60428 | | | || | ||| || | || | |||||| | |||||||| | ||||| || | Sbjct 4662 GGTTAACTGCCTTTGGCCCATGGATTCAGAAGTATCTTTGGTGGAAACAATATCTGACCA 4721 Query 60429 TAATGCA 60435 | |||| Sbjct 4722 TGCTGCA 4728 >seq376890 Length=3850 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || |||| ||||| | |||||||||| |||||||| ||||| ||||| ||||||| | Sbjct 2130 CCATCTTGCAGTTGCTAGCCAGCAAAGA--AGTCTTTGCTGATCAGGAGGAATTCCTTTC 2073 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || || || ||||| || ||||||||||| || ||||| ||||| || |||| || Sbjct 2072 TTGTCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCCAGGGTTCAACCTCCAGGGTG 2013 Query 82773 ATCGTC 82778 || ||| Sbjct 2012 ATGGTC 2007 >seq129591 Length=11435 Score = 95.1 bits (104), Expect = 2e-14 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||| | || ||||||||||| |||||||| || || ||| | | || | Sbjct 4880 AGCACCAAGTGTATGGTGGATTCTTTCTGGATATTATAGTCTGAGAGAGTACGGCCACCC 4821 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || ||||| | ||||| || || || ||||| | ||| | || | || | ||| Sbjct 4820 TC-AGCTGTTTGTCTGCAAAAATCAGACTGTGTTGGTGTGGCAGGATGTCCTCAGTGTCT 4762 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 | || || ||||| ||||| ||||| || || | | | || || | ||| || ||| Sbjct 4761 TTGATTTTGGCTTTGACATTCTCAATGGTGACACTGAGCTTGACCTCAAGAGTGATGGTC 4702 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||| ||||| ||||| |||||||| Sbjct 4701 TTGCCCATCAGGGTCTTCACAAAGATCTGCAT 4670 >seq391508 Length=33085 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||| | || ||||||||||| |||||||| |||| ||||| |||||||| Sbjct 12235 CCATCTTCCAGTGGCTTGCCAGCAAAGATCAGTCTTTGCTGATAAGGAGGGATTCCTTCT 12176 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTT 82740 ||| | || ||||| || |||||||||| Sbjct 12175 TTAACCTGGATCTTGGCCTTTACATTTT 12148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 976525577349516