Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq411564 123 2e-23 seq418776 111 2e-19 seq359707 104 2e-17 seq331670 93.3 4e-14 seq168090 91.5 1e-13 >seq411564 Length=61085 Score = 123 bits (136), Expect = 2e-23 Identities = 148/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||||||||| || |||||||| || ||| ||| || ||||| ||||| Sbjct 40472 GGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCGGCCGTCTTCCAGCTGTTTGCC 40531 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGG--ATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || | ||||||| |||||||||||| ||| ||||||||||| || |||||| | Sbjct 40532 TGCAAAGATGAGCCTCTGCTGGTCGGGGGGGGGATGCCTTCCTTATCCTGGATCTTGGCC 40591 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | || | ||||| |||||||||| || | ||||| ||| ||||| ||||| Sbjct 40592 TTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGG 40651 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || |||| |||||||| Sbjct 40652 GTCTTCCCGAAGATCTGCAT 40671 >seq418776 Length=96061 Score = 111 bits (122), Expect = 2e-19 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || |||||||| | ||| | || || ||||| ||||| Sbjct 55075 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCT 55016 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||| ||| || |||||||||||||| || |||||| ||| Sbjct 55015 GCAAAGATAAGCCTCTGCTAGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 54956 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| ||| |||||| || | ||||| ||| |||| |||| || Sbjct 54955 ACATTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTGCNNNTCAGGGTC 54896 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 54895 TTCACGAAGATCTGCAT 54879 >seq359707 Length=5412 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || ||||||| ||| | | | || || ||||| |||| Sbjct 2595 GGTAGACTCTTTCTGGATGCTGTAATCAGAAGGAGTGTGGCCA-TCTTCCAGCTGTTTGC 2653 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || ||||||||||| || || |||||| || Sbjct 2654 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCT 2713 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| ||| |||||| || | ||||| ||| ||||| |||| | Sbjct 2714 TCACGTTCTTGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGG 2773 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 2774 TCTTCACGAAGATCTGCAT 2792 >seq331670 Length=23129 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/202 (71%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || | ||| |||| Sbjct 21985 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCATCTGTTTGC 22043 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT---TT 133578 | || | | ||||| ||||||||| | ||||||||||| || || |||||| | Sbjct 22044 CTGCAAAGAGGAGCCTCTGCTGGTCAGCGGGGATGCCTTCTTTATCCTGGATCTTGGCAT 22103 Query 133579 GCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | || | || | ||||| |||||||||| || | ||||| ||| |||| ||||| Sbjct 22104 CCAGGACATTCT---CGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCAGGTCA 22160 Query 133639 GAGTTTTTACGAAAATCTGCAT 133660 | || || | ||| |||||||| Sbjct 22161 GGGTCTTCATGAAGATCTGCAT 22182 >seq168090 Length=9538 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||| ||| | ||| | | | || || || ||||||| Sbjct 8513 GGTCGACTCTTTCTGGATGTTGTGATCAGAAAGAGTGTGGCCA-TCTTCCAGATGCTTGC 8571 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||| |||||| |||||||||||| || |||||| || Sbjct 8572 CTGCAAAGATGAGCCTCTGCTGTTCGGGA-GGATGCCTTCCTCATCCTGGATCTTGGCCT 8630 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | | | |||| ||||||| || || | ||||| ||| |||| ||||| | Sbjct 8631 TCACATTCCTGATGATGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCTGGTCAACG 8690 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 8691 TCTTCACGAAGATTTGCAT 8709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480874115054560