Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq411564 123 2e-23
seq418776 111 2e-19
seq359707 104 2e-17
seq331670 93.3 4e-14
seq168090 91.5 1e-13
>seq411564
Length=61085
Score = 123 bits (136), Expect = 2e-23
Identities = 148/200 (74%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||||||||| || |||||||| || ||| ||| || ||||| |||||
Sbjct 40472 GGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCGGCCGTCTTCCAGCTGTTTGCC 40531
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGG--ATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| | ||||||| |||||||||||| ||| ||||||||||| || |||||| |
Sbjct 40532 TGCAAAGATGAGCCTCTGCTGGTCGGGGGGGGGATGCCTTCCTTATCCTGGATCTTGGCC 40591
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|| | | || | ||||| |||||||||| || | ||||| ||| ||||| |||||
Sbjct 40592 TTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGG 40651
Query 133641 GTTTTTACGAAAATCTGCAT 133660
|| || |||| ||||||||
Sbjct 40652 GTCTTCCCGAAGATCTGCAT 40671
>seq418776
Length=96061
Score = 111 bits (122), Expect = 2e-19
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||||||||| || |||||||| | ||| | || || ||||| |||||
Sbjct 55075 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCT 55016
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
|| | || |||| ||||| ||| || |||||||||||||| || |||||| |||
Sbjct 55015 GCAAAGATAAGCCTCTGCTAGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 54956
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | ||| | ||||| ||| |||||| || | ||||| ||| |||| |||| ||
Sbjct 54955 ACATTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTGCNNNTCAGGGTC 54896
Query 133644 TTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 54895 TTCACGAAGATCTGCAT 54879
>seq359707
Length=5412
Score = 104 bits (114), Expect = 2e-17
Identities = 144/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||||||||| || ||||||| ||| | | | || || ||||| ||||
Sbjct 2595 GGTAGACTCTTTCTGGATGCTGTAATCAGAAGGAGTGTGGCCA-TCTTCCAGCTGTTTGC 2653
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | ||||||| ||||||||| || ||||||||||| || || |||||| ||
Sbjct 2654 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCT 2713
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | || | ||||| ||| |||||| || | ||||| ||| ||||| |||| |
Sbjct 2714 TCACGTTCTTGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGG 2773
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||| ||||||||
Sbjct 2774 TCTTCACGAAGATCTGCAT 2792
>seq331670
Length=23129
Score = 93.3 bits (102), Expect = 4e-14
Identities = 144/202 (71%), Gaps = 8/202 (4%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||||||||| || |||||||| | ||| | | | || || | ||| ||||
Sbjct 21985 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCATCTGTTTGC 22043
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT---TT 133578
| || | | ||||| ||||||||| | ||||||||||| || || |||||| |
Sbjct 22044 CTGCAAAGAGGAGCCTCTGCTGGTCAGCGGGGATGCCTTCTTTATCCTGGATCTTGGCAT 22103
Query 133579 GCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638
| || | || | ||||| |||||||||| || | ||||| ||| |||| |||||
Sbjct 22104 CCAGGACATTCT---CGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCAGGTCA 22160
Query 133639 GAGTTTTTACGAAAATCTGCAT 133660
| || || | ||| ||||||||
Sbjct 22161 GGGTCTTCATGAAGATCTGCAT 22182
>seq168090
Length=9538
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/199 (71%), Gaps = 3/199 (2%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||||||||| || |||| ||| | ||| | | | || || || |||||||
Sbjct 8513 GGTCGACTCTTTCTGGATGTTGTGATCAGAAAGAGTGTGGCCA-TCTTCCAGATGCTTGC 8571
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | ||||||| |||||| |||||| |||||||||||| || |||||| ||
Sbjct 8572 CTGCAAAGATGAGCCTCTGCTGTTCGGGA-GGATGCCTTCCTCATCCTGGATCTTGGCCT 8630
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | | | |||| ||||||| || || | ||||| ||| |||| ||||| |
Sbjct 8631 TCACATTCCTGATGATGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCTGGTCAACG 8690
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||| || |||||
Sbjct 8691 TCTTCACGAAGATTTGCAT 8709
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 480874115054560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |