Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq366492 280 2e-70
seq166535 203 4e-47
seq323636 123 3e-23
seq375440 91.5 2e-13
>seq366492
Length=15653
Score = 280 bits (310), Expect = 2e-70
Identities = 665/1001 (66%), Gaps = 9/1001 (1%)
Strand=Plus/Minus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| |||||| | |||| ||| || | |||||||| || || | ||| |||
Sbjct 6202 CCAGGGCCTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 6143
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
||||||||||| ||||||| ||| ||| | | || ||||| || | || ||||
Sbjct 6142 TGTCGAACTTGTTGGCGAACAAGTGGTGCACGCGC---AACATCCAGTTCAAGTCACCCG 6086
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
|||||| ||||||||||| |||||||| ||||||||||||||||| || |||| || |
Sbjct 6085 CTCCGAAAACGCACACGGAGCGCACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCT 6026
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| | || || || |||| |||||||| || ||||| | || || ||||||||||
Sbjct 6025 TGGAAATGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCAATCGCGTGCATGTCGG 5966
Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
| |||||||||| | | | | || | || || || | || | ||||| | ||
Sbjct 5965 ACATGTCGTACTTATGGCTTAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATAG 5906
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418
| ||||| || | ||||| || || || || || || | ||||||||| | || |
Sbjct 5905 TGGCCCAGAGATACTCGTCCGGGCTGTATGTGTCTTTTGCCCACTCCATAAGCTTTTGTA 5846
Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478
||| || | || | || || || ||| | || | ||| || || || |
Sbjct 5845 TTTTTTCATTCTCGAGCACATACTCCACATACCTCCTACTGACCACAAAATAGGCACTGC 5786
Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538
| ||||||| ||| | | |||||| | |||||| ||| |||| | |
Sbjct 5785 CTGAAAACAGAGGTGTTTCAAGAGGAGGATGTATTTTGTCGGTCCCCATGTTTGTCAGCT 5726
Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598
|||| | ||||| | | ||| ||||||| | | ||| ||| | | |
Sbjct 5725 TTCCATTCACGACTGCATAATGCTTTTTCCACCTCTCTTTTTTATTGGATGGCATTCTCT 5666
Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658
| || ||||| |||| ||| || | ||| |||| | || || || || ||||
Sbjct 5665 CTGTTTCTAGGTTGTTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGG 5606
Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718
| |||| ||||| || | ||||||||||| || | || ||||| | || | | ||
Sbjct 5605 TTTTAATAGGAAAATCCATACCGCAGAGATTTATCAAGTACTTCCAGTCTGCGTTCATTC 5546
Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778
||| || ||||| | ||||| || || ||||| || || ||||| || || ||||| |
Sbjct 5545 GGTAGAGGTCCTGCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCAAGATGCATACACAA 5486
Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA--- 162835
| ||||||| | | |||| || |||||||| |||||| || | || || ||||
Sbjct 5485 CACTCTCCAGCTGACTGGCCACGAAGACATTACTGAAACAGGATGCAATGCCAATCACTG 5426
Query 162836 CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895
|||||| || | || || | ||| |||| ||||| | ||| || | ||||||||
Sbjct 5425 CGGCCAAAAAGGA-TTC--CTCTGATTTTGTATCCACGTGAATGCAATAGAAATTCTGAG 5369
Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955
| || || |||||||| | || || | ||| || || || || || ||||| | ||
Sbjct 5368 GCATATAAATAGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTACAG 5309
Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGT 163015
|||| ||||| || ||||| ||||| || ||| || | || || || ||||| |
Sbjct 5308 AATATGCTATTGGAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGCT 5249
Query 163016 CCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056
| | | || | ||||| || |||||||| | ||||
Sbjct 5248 TCTTGATGAAAGAAGCACAATCACTGGTCATGTTTATGTAG 5208
>seq166535
Length=11532
Score = 203 bits (224), Expect = 4e-47
Identities = 238/322 (74%), Gaps = 0/322 (0%)
Strand=Plus/Minus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
|| |||| || || |||| | || || || || || || ||||| ||||| || | |
Sbjct 4914 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGC 4855
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|| | |||| ||||| || |||| |||||| ||||| || || | || || || |||
Sbjct 4854 ACTTGTAACACCCTTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTGATGA 4795
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|||| || || || ||||| | | |||||| || | ||||||||| ||||| || || |
Sbjct 4794 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACCACAACCCCATGGT 4735
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
||| ||| || ||| ||||||||| ||||| |||||| || || ||||| || || |
Sbjct 4734 TCTGGCTAAAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 4675
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070
| | |||||| | | |||| ||||||||||||||||||||||||||||||| || |
Sbjct 4674 TCAGAACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAACT 4615
Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092
| ||| | ||||| || ||||
Sbjct 4614 CTCTTACATCTTGGGTCTCCAC 4593
Score = 105 bits (116), Expect = 8e-18
Identities = 160/226 (71%), Gaps = 9/226 (4%)
Strand=Plus/Minus
Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562
||||||| ||| ||| || |||||||||| ||| | || | ||| || || ||||
Sbjct 7524 ACAGTTTCCCTGTAGTCGGTCACAGTCCCCAGGTGCAGTACCTGGCAGATAACATCCT-- 7467
Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622
| ||||| ||||| || || ||||| | || || ||||| || |||||||| |||||
Sbjct 7466 -TCCCCACCTGACTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTCCCA 7408
Query 171623 TTACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679
|| | ||| |||| | | |||||| || || || | || || | || |||||
Sbjct 7407 TTGGGGTGTGAGAGAA---TCTCAGTACTGTTCTCAATCTCTGAGCCAGAGACCTTCCAG 7351
Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725
| || | ||| ||||| | |||| | ||||||||||| || ||||
Sbjct 7350 GAGATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 7305
>seq323636
Length=64455
Score = 123 bits (136), Expect = 3e-23
Identities = 416/639 (65%), Gaps = 13/639 (2%)
Strand=Plus/Minus
Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946
||||||||||||| ||| || | | ||||||||| | | || || | | |
Sbjct 22782 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTATCTACTTCCTTCAGATACTTTG 22723
Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006
| || || | || || | || || | ||| |||||||| | ||| | || | ||||
Sbjct 22722 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 22663
Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066
| || || || || || |||| || | || | || || | || |||| || ||
Sbjct 22662 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 22603
Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126
|||||| ||||| || || || || |||| | ||||| ||||| | ||||| ||||
Sbjct 22602 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 22543
Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184
| || | ||||| ||| || || || | | ||| | ||| ||||| | | | |
Sbjct 22542 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTG 22485
Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243
||| || ||| || || ||| ||| || ||||| ||| || || || || | |
Sbjct 22484 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 22426
Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302
| || |||||| || || || |||||||| |||||||| |||||||| || ||
Sbjct 22425 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTT-CTCTTTGCTTGGCAC---- 22371
Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361
||| | || || | | || | ||| | | ||||| ||||| || ||||| ||
Sbjct 22370 TTCAAACACGAAGGGGTTCGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGA 22311
Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGCT 177421
|||||| | || || | || || ||||| |||| || || || || ||| |
Sbjct 22310 GTCGCGGCGATAAGTCAGAGTCAGGTTGAACAGGTGCTCAATGCCGCTCTTCTGGGGTGT 22251
Query 177422 GTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGT 177481
|| | | || ||||| || |||||||| ||||| || || |||| ||| || | | |
Sbjct 22250 GTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTCGCCTGCTG 22191
Query 177482 AGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTG 177520
||||| | || |||| ||| || |||| ||| ||
Sbjct 22190 AGGTAAATTAGTCAGATCCCAACTGATGTCTCGGTGATG 22152
>seq375440
Length=19304
Score = 91.5 bits (100), Expect = 2e-13
Identities = 225/336 (67%), Gaps = 8/336 (2%)
Strand=Plus/Minus
Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702
|||||||| ||||||||| | ||||| || || || || ||| | | ||||||
Sbjct 14497 ACCATCTCAGCATTGGTCTTTATAGGAAAATCTGTCCCACACGTATTCAGTAAGTATTTC 14438
Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760
|| | | ||||| |||| | || || | | ||||||||| || ||||| || |
Sbjct 14437 CA--TGGCACTGAGCTCCGGAGCAAGTCTTCCATACAGTTCAGGTCAGCCTGCACCCTGG 14380
Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820
||| || ||||| || || | ||||| || |||| | |||||||| ||| || |
Sbjct 14379 ACCAGGAGGCGTAAACCACCCGGACCAACTTACTGGCCATGAAGACATTTGGGAAGCAGG 14320
Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878
||| || || | || ||| | ||| | | || | ||| ||| || || ||
Sbjct 14319 AAATGATGGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GACTTCTCATCCACATGGAC 14262
Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938
|||||||| ||||||||||| || | || | ||| | | ||||| | || |||||
Sbjct 14261 GCAGTATATGTTCTGAGGGGCATACACAGCTCGCAGCAGCCGTTCGAAGTTTTCAATCTT 14202
Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974
| || ||||| | ||| || || |||||||| ||
Sbjct 14201 CTCATGGACCACCACAGAGTAGGCGATGGGGAAGTC 14166
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 575384791302400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |