Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq366492 280 2e-70 seq166535 203 4e-47 seq323636 123 3e-23 seq375440 91.5 2e-13 >seq366492 Length=15653 Score = 280 bits (310), Expect = 2e-70 Identities = 665/1001 (66%), Gaps = 9/1001 (1%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| |||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 6202 CCAGGGCCTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 6143 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||||||||| ||||||| ||| ||| | | || ||||| || | || |||| Sbjct 6142 TGTCGAACTTGTTGGCGAACAAGTGGTGCACGCGC---AACATCCAGTTCAAGTCACCCG 6086 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| ||||||||||| |||||||| ||||||||||||||||| || |||| || | Sbjct 6085 CTCCGAAAACGCACACGGAGCGCACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCT 6026 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | | || || || |||| |||||||| || ||||| | || || |||||||||| Sbjct 6025 TGGAAATGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCAATCGCGTGCATGTCGG 5966 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||||||||| | | | | || | || || || | || | ||||| | || Sbjct 5965 ACATGTCGTACTTATGGCTTAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATAG 5906 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | ||||| || || || || || || | ||||||||| | || | Sbjct 5905 TGGCCCAGAGATACTCGTCCGGGCTGTATGTGTCTTTTGCCCACTCCATAAGCTTTTGTA 5846 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | || | || || || ||| | || | ||| || || || | Sbjct 5845 TTTTTTCATTCTCGAGCACATACTCCACATACCTCCTACTGACCACAAAATAGGCACTGC 5786 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | |||||| | |||||| ||| |||| | | Sbjct 5785 CTGAAAACAGAGGTGTTTCAAGAGGAGGATGTATTTTGTCGGTCCCCATGTTTGTCAGCT 5726 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 |||| | ||||| | | ||| ||||||| | | ||| ||| | | | Sbjct 5725 TTCCATTCACGACTGCATAATGCTTTTTCCACCTCTCTTTTTTATTGGATGGCATTCTCT 5666 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || ||||| |||| ||| || | ||| |||| | || || || || |||| Sbjct 5665 CTGTTTCTAGGTTGTTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGG 5606 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 | |||| ||||| || | ||||||||||| || | || ||||| | || | | || Sbjct 5605 TTTTAATAGGAAAATCCATACCGCAGAGATTTATCAAGTACTTCCAGTCTGCGTTCATTC 5546 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || ||||| | ||||| || || ||||| || || ||||| || || ||||| | Sbjct 5545 GGTAGAGGTCCTGCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCAAGATGCATACACAA 5486 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA--- 162835 | ||||||| | | |||| || |||||||| |||||| || | || || |||| Sbjct 5485 CACTCTCCAGCTGACTGGCCACGAAGACATTACTGAAACAGGATGCAATGCCAATCACTG 5426 Query 162836 CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895 |||||| || | || || | ||| |||| ||||| | ||| || | |||||||| Sbjct 5425 CGGCCAAAAAGGA-TTC--CTCTGATTTTGTATCCACGTGAATGCAATAGAAATTCTGAG 5369 Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955 | || || |||||||| | || || | ||| || || || || || ||||| | || Sbjct 5368 GCATATAAATAGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTACAG 5309 Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGT 163015 |||| ||||| || ||||| ||||| || ||| || | || || || ||||| | Sbjct 5308 AATATGCTATTGGAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGCT 5249 Query 163016 CCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 | | | || | ||||| || |||||||| | |||| Sbjct 5248 TCTTGATGAAAGAAGCACAATCACTGGTCATGTTTATGTAG 5208 >seq166535 Length=11532 Score = 203 bits (224), Expect = 4e-47 Identities = 238/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || || || || ||||| ||||| || | | Sbjct 4914 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGC 4855 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| ||||| || |||| |||||| ||||| || || | || || || ||| Sbjct 4854 ACTTGTAACACCCTTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTGATGA 4795 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | |||||| || | ||||||||| ||||| || || | Sbjct 4794 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACCACAACCCCATGGT 4735 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| ||| || ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 4734 TCTGGCTAAAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 4675 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | | |||||| | | |||| ||||||||||||||||||||||||||||||| || | Sbjct 4674 TCAGAACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAACT 4615 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | ||||| || |||| Sbjct 4614 CTCTTACATCTTGGGTCTCCAC 4593 Score = 105 bits (116), Expect = 8e-18 Identities = 160/226 (71%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || |||||||||| ||| | || | ||| || || |||| Sbjct 7524 ACAGTTTCCCTGTAGTCGGTCACAGTCCCCAGGTGCAGTACCTGGCAGATAACATCCT-- 7467 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||||| || || ||||| | || || ||||| || |||||||| ||||| Sbjct 7466 -TCCCCACCTGACTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTCCCA 7408 Query 171623 TTACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 || | ||| |||| | | |||||| || || || | || || | || ||||| Sbjct 7407 TTGGGGTGTGAGAGAA---TCTCAGTACTGTTCTCAATCTCTGAGCCAGAGACCTTCCAG 7351 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 | || | ||| ||||| | |||| | ||||||||||| || |||| Sbjct 7350 GAGATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 7305 >seq323636 Length=64455 Score = 123 bits (136), Expect = 3e-23 Identities = 416/639 (65%), Gaps = 13/639 (2%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | ||||||||| | | || || | | | Sbjct 22782 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTATCTACTTCCTTCAGATACTTTG 22723 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 22722 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 22663 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| || | || | || || | || |||| || || Sbjct 22662 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 22603 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | ||||| ||||| | ||||| |||| Sbjct 22602 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 22543 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 22542 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTG 22485 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || || | | Sbjct 22484 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 22426 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| |||||||| |||||||| || || Sbjct 22425 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTT-CTCTTTGCTTGGCAC---- 22371 Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | || || | | || | ||| | | ||||| ||||| || ||||| || Sbjct 22370 TTCAAACACGAAGGGGTTCGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGA 22311 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGCT 177421 |||||| | || || | || || ||||| |||| || || || || ||| | Sbjct 22310 GTCGCGGCGATAAGTCAGAGTCAGGTTGAACAGGTGCTCAATGCCGCTCTTCTGGGGTGT 22251 Query 177422 GTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGT 177481 || | | || ||||| || |||||||| ||||| || || |||| ||| || | | | Sbjct 22250 GTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTCGCCTGCTG 22191 Query 177482 AGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTG 177520 ||||| | || |||| ||| || |||| ||| || Sbjct 22190 AGGTAAATTAGTCAGATCCCAACTGATGTCTCGGTGATG 22152 >seq375440 Length=19304 Score = 91.5 bits (100), Expect = 2e-13 Identities = 225/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | ||||| || || || || ||| | | |||||| Sbjct 14497 ACCATCTCAGCATTGGTCTTTATAGGAAAATCTGTCCCACACGTATTCAGTAAGTATTTC 14438 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || | | ||||| |||| | || || | | ||||||||| || ||||| || | Sbjct 14437 CA--TGGCACTGAGCTCCGGAGCAAGTCTTCCATACAGTTCAGGTCAGCCTGCACCCTGG 14380 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || ||||| || || | ||||| || |||| | |||||||| ||| || | Sbjct 14379 ACCAGGAGGCGTAAACCACCCGGACCAACTTACTGGCCATGAAGACATTTGGGAAGCAGG 14320 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 ||| || || | || ||| | ||| | | || | ||| ||| || || || Sbjct 14319 AAATGATGGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GACTTCTCATCCACATGGAC 14262 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 |||||||| ||||||||||| || | || | ||| | | ||||| | || ||||| Sbjct 14261 GCAGTATATGTTCTGAGGGGCATACACAGCTCGCAGCAGCCGTTCGAAGTTTTCAATCTT 14202 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | || ||||| | ||| || || |||||||| || Sbjct 14201 CTCATGGACCACCACAGAGTAGGCGATGGGGAAGTC 14166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575384791302400