Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq393589 123 6e-23 seq258579 122 2e-22 seq336898 120 7e-22 seq364176 109 1e-18 seq414080 100 7e-16 seq397823 96.9 8e-15 >seq393589 Length=19132 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||||| | | |||||| | | || ||| | || ||| | ||| Sbjct 7860 AAGACCCTGACAGGAAGACC-ATCACTCTCAAGGTTGAACCCTTGGATACAATAGAAAAT 7918 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || |||||||||| || ||| |||||||| ||||| Sbjct 7919 GTAAAGGCCAAGATCCAGGACAAGGAAGGAATTTCCCCTGACCAGCAAAGACTGATCTTT 7978 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || |||||| | || || ||||| Sbjct 7979 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCC 8038 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 ||||||| ||||| |||||||||| Sbjct 8039 GCTCTTCATCTTGTGTTGAGACTTC 8063 Score = 91.5 bits (100), Expect = 3e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| ||||| ||||||| ||||| || || | || ||||||| |||||| | Sbjct 8063 GAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 8004 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||| ||||| || || ||||| || | ||| || Sbjct 8003 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 7961 >seq258579 Length=20613 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | || || ||| || || || | ||| Sbjct 18984 AAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCCTCGGATGCAATAGAAAAT 19043 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 19044 GTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 19103 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | | |||| | || |||||||| || || ||||| Sbjct 19104 GCAGGCAAGCAACTGGAAGATGGACGTATTTTGTCTGACTACAACGTTCAAAAGGAGTCC 19163 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 ||||||| ||||| |||||||||| Sbjct 19164 GCTCTTCATCTTGTGTTGAGACTTC 19188 Score = 91.5 bits (100), Expect = 3e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| ||||| ||||||| ||||| || || || || ||||||| |||| | | Sbjct 19188 GAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATAC 19129 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||| ||||| || || ||||| || | ||| || Sbjct 19128 GTCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTG 19086 >seq336898 Length=33758 Score = 120 bits (132), Expect = 7e-22 Identities = 158/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || | || || || ||||| | | |||||| | || || ||| || || Sbjct 29651 CAGATTTTCTTGAAGACCCTGACAGGGATGGCCATCACTCTCGAGGTTGAACCCTCGGAT 29710 Query 206233 ACAGTCGAATCA-GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| | |||||| |||| || || || ||||||||| || ||| || Sbjct 29711 ACAATAGAAAAATGTAAAGGCCAAGAGCCAGGACAAGGAAGGAATTCCTCCTGACCAGCA 29770 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || ||| ||||| || || ||||| ||||||||||| | |||||| | || |||||| | Sbjct 29771 AACACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACAT 29830 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTC 206389 || || |||||||||||||| ||||| ||||||||| Sbjct 29831 TCAAAAGGAGTCTACTCTTCATCTTGTAGTGAGACTTC 29868 Score = 93.3 bits (102), Expect = 1e-13 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 ||||||||| ||||| |||||||||||||| || || | || ||||||| |||||| | Sbjct 29868 GAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 29809 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 |||||||||||| ||||| || || ||||| || Sbjct 29808 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAG 29775 >seq364176 Length=18321 Score = 109 bits (120), Expect = 1e-18 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | || || ||| | || ||| ||| Sbjct 5550 AAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTTGGATACAACAGAAAAT 5491 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| ||||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 5490 GTAAACGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 5431 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || ||||| || || ||||| Sbjct 5430 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACCACAACACTCAAAAGGAGTCC 5371 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||| ||||| |||||||||| Sbjct 5370 ACTCTTCATCTTGTGTTGAGACTTC 5346 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| ||||| |||||||| ||||| || || || | ||||| |||||| | Sbjct 5346 GAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTGGTCAGACAAAGTAC 5405 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||| ||||| || || ||||| || | ||| || Sbjct 5406 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 5448 >seq414080 Length=5684 Score = 100 bits (110), Expect = 7e-16 Identities = 138/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 206203 ACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA-GTAAAGCAAAAGATTCA 206261 || |||||| | ||||| ||| || || ||| ||| | |||||| ||||| || Sbjct 4556 ACCATCACTCTTGAAGTTGAACCCTCAGATACAACAGAAAAATGTAAAGGTCAAGATCCA 4615 Query 206262 AGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGA 206321 || || ||||||||| || ||| |||||||| ||||| || || ||||| |||| Sbjct 4616 GGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGA 4675 Query 206322 AGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT-TGTTT 206380 ||||||| | ||||| || |||||| | || || ||||| |||||||| || | | Sbjct 4676 AGATGGATGTACTTT----GACTACAACATTCAAAAGGAGTCCACTCTTCATCTAAATGT 4731 Query 206381 TGAGACTTCG 206390 |||||||||| Sbjct 4732 TGAGACTTCG 4741 >seq397823 Length=5921 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || | || ||||| || || |||||| | || || ||| || || Sbjct 1890 CAGATTTTTGTGAAGATCCTGACAGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGAT 1831 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| ||| ||||| ||||| ||||| || |||| |||| | || ||| Sbjct 1830 ACAACAGAAAATGTAAACGCCAAGATCCAAGATAAGGAAGTAATTCCTTCTAACCAGCAA 1771 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || || || || ||||| ||||||||||| | |||||| | || |||||| Sbjct 1770 GGATTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACAGT 1711 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| |||||||| ||| | ||||||||||| Sbjct 1710 CAAAAGGAGTCCACTCTTCATCTTCTGTTGAGACTTCG 1673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175439261657924