Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq258579 95.1 1e-14 seq411564 91.5 1e-13 seq418776 87.8 2e-12 seq393589 84.2 2e-11 >seq258579 Length=20613 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 |||||||| | ||| | | ||||||||||| |||||| || | ||| | || | Sbjct 19183 CTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATACGTCCA 19124 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||| ||||| || ||||| |||| | |||||||| | ||||| | |||||| Sbjct 19123 TCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTG 19064 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| |||||| ||| | | || | | | || | ||| ||||| | ||||| Sbjct 19063 TCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTCAAGAGTGATG 19004 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || ||||||| || ||||| || |||||||| Sbjct 19003 GTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 18969 >seq411564 Length=61085 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || |||| |||||||| || || ||||| Sbjct 40478 CTCTTTCTGGATGTTGTAATCAGAAATAGTGCGGCCGTCTTCCAGCTGTTTGCCTGCAAA 40537 Query 35605 TATCAACCGCTGCTGGTC--CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGA 35662 || | || ||||||||| | || | || ||||| ||| |||||| ||||| | Sbjct 40538 GATGAGCCTCTGCTGGTCGGGGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACA 40597 Query 35663 GTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| || | |||||||||| ||||| || || ||||||| || ||| Sbjct 40598 TTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 40657 Query 35723 ACAAATATCTGCAT 35736 | || |||||||| Sbjct 40658 CCGAAGATCTGCAT 40671 >seq418776 Length=96061 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || | | || |||||||| || || ||||| Sbjct 55070 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAA 55011 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||| ||| | || | || ||||| ||| |||||| ||||| | | Sbjct 55010 GATAAGCCTCTGCTAGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 54951 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || || |||||||||| ||||| || || | ||| || ||||| Sbjct 54950 CTCGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTGCNNNTCAGGGTCTTCAC 54891 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 54890 GAAGATCTGCAT 54879 >seq393589 Length=19132 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/226 (69%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||| | | |||||||| | ||| | | |||||||||||||||||| || | | Sbjct 8070 CCACCATGAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAATGTTGTAGTCAGAC 8011 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | |||||||| | | | Sbjct 8010 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAA 7951 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| |||||| ||| | | || | | || || | ||| ||| Sbjct 7950 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACC 7891 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA 35735 | | ||||| || || || |||| || |||| || ||||||| Sbjct 7890 TTGAGAGTGATGGTCTT-CCTGTCAGGGTCTTCATGAAAATCTGCA 7846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448418796775520