Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq366024 282 3e-71 seq404197 196 4e-45 seq379991 132 4e-26 seq418289 107 2e-18 seq275938 102 6e-17 seq400361 86.0 5e-12 >seq366024 Length=42324 Score = 282 bits (312), Expect = 3e-71 Identities = 611/902 (68%), Gaps = 28/902 (3%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| || |||| ||||| || ||||| ||||| || ||||| |||| Sbjct 17470 TTTGTCATCTTTCCTATCAAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCT 17529 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817 || ||||||||||| ||||| || || | | || ||| | ||||| ||| || Sbjct 17530 TCCTTTTGGACAGCTGAAGAGGTGGACCTTTCCAAGGACATTCAGCAC--TGGGAAGCCC 17587 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 | || || | || | | |||| || || || |||| || ||||| || || || | Sbjct 17588 TGAAGCCTGAGGAGAGATATTTCATTTCGCATATTCTGGCTTTCTTTGCAGCAAGTGATG 17647 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCA 43936 | ||||| |||||||| ||||| | |||| ||||||||||| |||| | ||||| Sbjct 17648 GCATAGTAAATGAAAACTTGGTGGAGCAGTTTAGCCAAGAAGTTCAGATTA-CGGAAGCC 17706 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 || ||||| ||||| || | ||||||||| ||||| || ||||| |||||||| ||||| Sbjct 17707 CGTTGTTTCTATGGCTTCCTAATTGCCATGGAAAACATCCATTCTGAAATGTATAGTCTC 17766 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAA 44056 || || || || ||||| |||||| | || | | | | || || || || || Sbjct 17767 CTCATTGACACTTACATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAACGCTATTGAG 17826 Query 44057 ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAAT 44113 ||| | ||| | || | || ||||| |||||| | ||||| | | | Sbjct 17827 ACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGTGCTGGATCGGGGACAAAGAG 17886 Query 44114 GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 | | | | ||||||||| | || || ||||| | |||||||| || |||||||| || Sbjct 17887 GCTACGTATGGAGAACGTTTCGTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGT 17946 Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233 || ||||| | ||||| ||| | || ||||||||| |||| || || | || ||||| Sbjct 17947 TCTTTTGCATCGATATTCTGGCTCAAAAAACGAGGTCTGATACCCGGCCTCACATTTTCC 18006 Query 44234 AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGA 44293 ||||| | || || | || || || ||||| || || ||||| ||| || || | | Sbjct 18007 AATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATATTCAAA 18066 Query 44294 TATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTA 44353 | || | || | || ||||| ||| | | | | | || | || | ||||| Sbjct 18067 CACCT--GCTAC-ACAAACCTTCGGAGCAGAGAGTCAAATAAATAATCGTCAATGCAGTT 18123 Query 44354 AAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGA 44412 | |||||||| || || | || || | || || || | || || ||||| || Sbjct 18124 AGAATAGAACAGGAGTTCCTCACGGATGCCCTGCCAGTGAAGCTCATTGGGATGAATTGC 18183 Query 44413 ACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTT---GGAACTGGG 44469 || ||||||||| || || || |||| | | ||||| | |||| | ||| ||||| Sbjct 18184 AC-TTTGATGAAGCAGTACATCGAATTCGTGGCAGACAG---ACTTATGCGGGAGCTGGG 18239 Query 44470 TTGCGATAAACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGT 44525 || | | || | || ||| |||| || ||||| |||||||| |||||||| Sbjct 18240 TT----TTAGCAAGGTTTTCAGAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCAC 18295 Query 44526 TGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCA 44585 ||||||| || || ||||| | ||| || | || || || |||||| | ||| | || | Sbjct 18296 TGGAAGGGAAGACTAACTTCTCTGAGAAGAGAGTAGGCGAGTATCAGAGGATGAGAGTGA 18355 Query 44586 TG 44587 || Sbjct 18356 TG 18357 >seq404197 Length=65104 Score = 196 bits (216), Expect = 4e-45 Identities = 586/896 (65%), Gaps = 20/896 (2%) Strand=Plus/Plus Query 43702 TGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTC 43761 |||| | ||||| || ||| | ||| || ||||| |||| || || || |||| || Sbjct 52195 TGTCTTCTTTCCTATCGGATACCGTGATATTTGGCAGATGTGTAAGAACGCTGAGGCTTC 52254 Query 43762 ATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTA 43819 || ||||| || || || || || | | || ||| | ||||| | | || | Sbjct 52255 CTTCTGGACGGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGCACCGGGAA--GCCCTG 52312 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 || || | || | | |||| | || || || | || | ||| || || ||||| Sbjct 52313 AAGCCTGAGGAGAGATATTTCACTTCGCATGTCCTGCCTTTCTCTGCAGCAAGTGACGGC 52372 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACG 43938 |||| |||||||| |||| ||| || ||||||||||| |||| | ||||| | Sbjct 52373 GTAGTAAATGAAAACCTGGTGGAGCGGCTTAGCCAAGAAGTTCAGATTA-CGGAAGCCCA 52431 Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 | ||| ||||| || ||||| ||||| ||||| || |||||||||||||| ||||| || Sbjct 52432 TTATTTCTATGGCTTCCAAATCGCCATGGAAAACATACATTCGGAAATGTATAGTCTCCT 52491 Query 43999 GATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAAC 44058 || || || ||||| ||||| | || | | | | || || || || || || Sbjct 52492 CATTGACACTTACATTCAAGATTCCAAAGAAAGGGAATTTCTCTTCAACGCCATTGAGAC 52551 Query 44059 AGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTC 44118 | | ||| | || | || ||||| |||||| | ||||| | || || | Sbjct 52552 AATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATCGAGGACAAAGAGGC 52611 Query 44119 T---TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 | | || | || | || || ||||| | |||||||| || |||||||| || || Sbjct 52612 TAGGTACTGAAAGCGTGTCGTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTC 52671 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 ||||| | ||||| ||| | |||||| |||| ||||||| || | || ||||| || Sbjct 52672 TTTTGCATCGATATTCTGGCTCAAGAAATGAGGACTGATGCCCGGCCTCACATTTTCCAA 52731 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATA 44295 ||| | || || | || || || ||||| || || ||||| | | || | | | | Sbjct 52732 TGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTTCCTGATGTTCAAACA 52791 Query 44296 TCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAA 44355 || | || | || ||||| ||| | | | ||| ||| | || | ||||| | Sbjct 52792 CCT--GCTAC-ACAAACCTTCGGAGCAGAGAGTCAAAGAAATTATCGTCAATGCAGTTAG 52848 Query 44356 GATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACT 44415 ||||||||| || || | || || | || || | || || |||||| Sbjct 52849 GATAGAACAGGAGTTCCTCACGGAGGCCCCGACAGTGAAGCTCATTGGGATGAATTGCGC 52908 Query 44416 TTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGA 44475 ||||||||| || || || ||| | | ||||| | | | |||| ||||||| Sbjct 52909 TTTGATGAAGCAGTACATCAAATTCCTGGCAGACAGACTTATGCTGGAGCTGGGTT---- 52964 Query 44476 TAAACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAG 44531 | | || | || ||| |||| || ||||| |||||||| |||| ||| |||||| Sbjct 52965 TTAGCAAGGTTTTCAGAGTAGAAAATCCATTTGACTTTATGGAGAATAGTTCACTGGAAG 53024 Query 44532 GCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | || || ||||| ||||| || | || || || |||||| | ||||| || ||| Sbjct 53025 GGAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATG 53080 >seq379991 Length=26627 Score = 132 bits (146), Expect = 4e-26 Identities = 179/248 (72%), Gaps = 1/248 (0%) Strand=Plus/Minus Query 47201 CATTGGTTTTA-CAACGTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATT 47259 || |||||| | || ||| | || ||||||||| | ||| | ||| | || ||| | | Sbjct 24772 CAGTGGTTTCATCAGTGTGCTACAGTTTTTAGGATTATATAAGAAAACTGGTAAATTGGT 24713 Query 47260 ATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTG 47319 |||||| || || || |||| |||||||| |||| || |||||||| ||| || | Sbjct 24712 ATTTCTTGGATTGGATAATGTGGGAAAAACAACATTGCTACACATGCTAAAAGTTGATGG 24653 Query 47320 CATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCAT 47379 | | | ||| ||| | |||||||| || || ||| ||||||| ||||||||||| Sbjct 24652 ACTTGGACAACATGTCCCAATGTTACATCCCACTTCAGAAGAACTAACCATTGCTGGCAT 24593 Query 47380 AACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTA 47439 || |||| || |||||| | || ||||| ||||||| || ||| ||||| |||| || Sbjct 24592 GACCTTTACAACTTTTGATCTGGGTGGACATGTTCAAGCTCGAAGAGTGTGGAAAAACTA 24533 Query 47440 TTTTCATG 47447 ||| || Sbjct 24532 CCTTCCTG 24525 >seq418289 Length=29330 Score = 107 bits (118), Expect = 2e-18 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||| | ||||| || ||||| ||||| || |||||||| Sbjct 24680 CGGTTTAGCCAAGAAGTTCAGATTA-CGGAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 24738 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 24739 CATGGAAAACATCCATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 24796 >seq275938 Length=4795 Score = 102 bits (112), Expect = 6e-17 Identities = 231/345 (67%), Gaps = 13/345 (4%) Strand=Plus/Minus Query 77341 GTCCAGCTTCATAAAGTCATCCTTGTTGA-CAACTGACCCTCCGCCATGCAG--CCTCCA 77397 |||||| | || ||||| || ||||||| || || ||| | | ||| |||||| Sbjct 3145 GTCCAGTTCCACGAAGTCCTCTTTGTTGATCACCT---CCTTCCCTGTGCTTGTCCTCCA 3089 Query 77398 GCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGGTGAACATGCTGTC 77457 || |||| ||||||| |||| ||||| | |||||||| || ||||||||||| Sbjct 3088 TCCATTCTTCTTCCAG-------CCCAATTAGTGATGCCATTGATAGTAAACATGCTGTC 3036 Query 77458 TGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATGC 77517 |||||||| |||| ||| |||| || | ||| ||||||| | |||||| | || Sbjct 3035 TGTGTAGAGAACCAACTTACTGATGTTCTGAGCCTTCGCTTGTTCGATGGCTTTGCAGGC 2976 Query 77518 AGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACATTAAG 77577 || || || || || | |||||||| ||| ||| ||||| | | ||||| | Sbjct 2975 TGCATGAATCTCTGCTCTTTGGTTTGTTTGTCACCCAGTAAGTCTAATTCCTACATTTAA 2916 Query 77578 CGGGTGATTATAACCCCAATATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTTGA 77637 || || ||||| || || || || || ||||| || |||| || || Sbjct 2915 AGGATGGCCTGGCCCCCAGTAAACACCGATTCCTGCTCGAGCCCCCCTCTGCCCATTACT 2856 Query 77638 TAAGCAACAGCCGTCAGTGTAGACCACCACGGCGTCACCCATGTA 77682 |||| |||||||| ||||||| | || | || ||||| || Sbjct 2855 GGAGCAGCAGCCGTCCTTGTAGACGATGACAGTTTCCCCCATATA 2811 >seq400361 Length=55729 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 24292 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAGGGGAAAACAAATTTCTTTGAGA 24233 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 24232 AACGAGTTTCAGAGTATCAGCG 24211 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| || || | |||||| ||| ||||||| ||| | |||||||| Sbjct 46419 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAACAGGCACAGGCA 46360 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 46359 TCCTTCTGGACAGCAGAAGAGGT 46337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395414527371220