Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq397970 131 1e-25 seq397969 84.2 2e-11 >seq397970 Length=5258 Score = 131 bits (144), Expect = 1e-25 Identities = 478/738 (65%), Gaps = 24/738 (3%) Strand=Plus/Minus Query 111563 AAATAGCAACATCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAAT-TCAAAGTCA 111621 ||| ||| | ||||| || |||| || ||||| | || || |||| | |||||| Sbjct 2390 AAACAGCCATTTCCATTTTAATAGTCGGGTGAGGATTGTAGC-CTTCAATCTGAAAGTCT 2332 Query 111622 TCAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGG 111681 ||||| || || ||||| ||||| |||| ||| | || || || || || Sbjct 2331 TCAGCCTTGAAGTCATCAATTTTCTCAACTTTTCGAAGGATTCTGAGCTTGGGGAAAGGC 2272 Query 111682 GTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCA 111741 | || | ||| |||||| | || | ||| |||||||| | |||| || ||| Sbjct 2271 CTTGGTTCTCGCTGAAGCTGAATTTTCAGCAGCTCAATGTGATTCAGGTAAATGTGTGCA 2212 Query 111742 TCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTAT 111801 ||||| | | || | || || | |||| || || ||||||||||| |||||||| Sbjct 2211 TCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGTGCGATCATGTA- 2153 Query 111802 GTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTT 111861 | || ||| || || ||||| || |||||||| |||||||||||||| || || Sbjct 2152 ----GCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATATCTCCTGACCTC 2097 Query 111862 TGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAA 111921 || || ||||| || || || | | | ||| || || || ||||| | || || Sbjct 2096 TGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCGTGGCAC 2037 Query 111922 GGAGGCAATGCCATCCCATTCATA---AAGGGTCCCCATGCACACATGATCATCCTTCTG 111978 || || | ||||| | | | || ||| ||||||| ||| || |||||| Sbjct 2036 GGGGGTAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTCTG 1977 Query 111979 CTGT-AGCGATTATGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTACC 112037 || || | | | || | ||| || | || || || || |||| |||| | | Sbjct 1976 TCGTCAGGGTTGGTTTTGATTGT-GTCAGTCACTTTTTGCAGTTGATCTACTCCTTGATC 1918 Query 112038 AGTATAATCCGCCTGACATCCA-----GTGTATGTTGCCCCATAGTGTCTCCATTGGAAT 112092 | ||||| |||| ||||| ||||| |||||| | || ||||| || || Sbjct 1917 TGAATAAT----CTGA-ATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAG 1863 Query 112093 CCATAAATAGGCCCCAGATCTCCCGGGGCTGTATCTGGA-AATTGCTCTCTATTCAACAA 112151 ||||||| || || | ||| || ||| | |||| ||| | || | ||| || Sbjct 1862 CCATAAACTGGGCCTAAATCCCCTTCTGCTCT-GGTGGAGAATCCCAGGCTGTCCAAGAA 1804 Query 112152 ATCACTTCTAATATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATT 112211 || | || | || ||| || |||||||| || || || | ||| | || || Sbjct 1803 GTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTT 1744 Query 112212 TGTGGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTT 112271 ||||||||| | |||||||| ||||| || ||| ||| || || ||| | || | ||| Sbjct 1743 TGTGGATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAACACGTTT 1684 Query 112272 AGTAGTTAGCAGTGGaaa 112289 || || ||||| ||||| Sbjct 1683 GGTTGTCAGCAGAGGAAA 1666 >seq397969 Length=7843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || ||||||||||| |||||||| ||||| || ||| || || ||||| || |||||| Sbjct 7709 CCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACA 7650 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAG 111881 || |||||||| ||||| || || || | ||||| || || || Sbjct 7649 CCCAGGCCCATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAG 7606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 389932430707372