Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq366024 95.1 1e-14 seq418289 89.7 6e-13 >seq366024 Length=42324 Score = 95.1 bits (104), Expect = 1e-14 Identities = 302/455 (66%), Gaps = 30/455 (7%) Strand=Plus/Plus Query 59980 AACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCT 60038 ||||| || |||| ||||| ||| ||||||||||||||||| ||||| || || | Sbjct 17900 AACGTTTCGTAGCCTTTGC-TGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCG 17958 Query 60039 ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATT 60098 || |||||||||||||| || || || || || ||||| | || ||||| || || ||| Sbjct 17959 ATATTCTGGCTCAAAAAACGAGGTCTGATACCCGGCCTCACATTTTCCAATGAACTTATT 18018 Query 60099 TCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTC--ACACCTATTGG 60156 | | |||||||| | || || ||||| || | ||||| |||||| | Sbjct 18019 AGCAGAGACGAGGGTTTACACTGTGACTTTGC-CTG-CCTGATATTCAAACACCTGCTAC 18076 Query 60157 AAAAATGCCCTTCCAAG--GATATTCA---CAAGATTGTTCAGTGGGCTTGTGAAGTGGA 60211 | ||| ||||| || || | ||| || | | ||| || || ||| | | Sbjct 18077 ACAAA---CCTTCGGAGCAGAGAGTCAAATAAATAATCGTCAATGCAGTT-AGAATAGAA 18132 Query 60212 GAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGA--GAA 60269 || |||||| |||| || || || ||| || ||||| || ||| | || | Sbjct 18133 CAG-GAGTTCCTCACGGATGCCCTGCCAGTGAAGCTCATTGGGATGAA--TTGCACTTTG 18189 Query 60270 ATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATG-----GCCCAGTTTGGAGAAG 60324 |||| ||||||||| | || || || ||| | || ||| || |||| ||| Sbjct 18190 ATGAAGCAGTACATCGAATTCGTGGCAGACAGACTTATGCGGGAGCTGGGTTTTAGCAAG 18249 Query 60325 GACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGA 60384 | ||| | | || | || || || |||| ||||||| || || ||||||||| Sbjct 18250 G-----TTTTCAGAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGA 18304 Query 60385 AGACCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 |||| ||||||| ||||||| | || || || ||| Sbjct 18305 AGACTAACTTCTCTGAGAAGAGAGTAGGCGAGTAT 18339 >seq418289 Length=29330 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 59980 AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTA 60039 ||||| || |||| ||||| ||||||||||||||||| ||||| || || | | Sbjct 26661 AACGTGTCGTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGA 26720 Query 60040 TTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTT 60099 | |||||||||||||| || || || ||||| ||||| | || ||||| || || ||| Sbjct 26721 TATTCTGGCTCAAAAAACGAGGTCTGATGCCCGGCCTCACATTTTCCAATGAACTTATTA 26780 Query 60100 CCCGGGACGAGG 60111 | | ||||||| Sbjct 26781 GCAGAGACGAGG 26792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545635143927360