Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq80074 104 3e-17 seq400361 89.7 6e-13 seq365579 82.4 8e-11 >seq80074 Length=6561 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| ||||||||||||| || | ||||| || || Sbjct 3119 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 3060 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| |||||||||||| || ||| ||||||||||| |||||||| |||| | Sbjct 3059 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAGTTCTGAGCCAAATTGATA 3000 Query 117425 ATCGT 117429 || || Sbjct 2999 ATGGT 2995 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 3119 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 3060 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| || || ||| ||||| || |||||||||||||| | | Sbjct 3059 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAGTTCTGAGCCAAATTGATA 3000 Query 152149 ATCGT 152153 || || Sbjct 2999 ATGGT 2995 >seq400361 Length=55729 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| || | |||||| ||||| | ||| |||||||||||||| | |||| Sbjct 38420 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 38479 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889 | | ||| || || ||| || || || |||||| || ||||| ||| ||||||| Sbjct 38480 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 38539 Query 74890 CGAC 74893 | || Sbjct 38540 CCAC 38543 >seq365579 Length=24931 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| |||||||| || ||||| || ||| || || || || || Sbjct 6686 GTGAAAATGTAACGAGGACTTGCAGCGTCTTTGCCCCCGTGAAGCCGAGTTCCAAACTGA 6627 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||| | | ||| | |||||| ||||||||||| ||||||||||| || Sbjct 6626 CCGATGGGCTGAAGCAAGTTAATGTTGTTACTCCCCACAAAGTTCTGAGCCAAGTTCACG 6567 Query 117425 ATCGT 117429 || || Sbjct 6566 ATAGT 6562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544333238751200