Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq258579 149 7e-31 seq364176 143 3e-29 seq393589 138 1e-27 seq336898 129 7e-25 seq397823 122 1e-22 seq414080 116 4e-21 seq129591 116 4e-21 seq168090 105 8e-18 seq366847 102 9e-17 seq80074 91.5 2e-13 seq260509 89.7 6e-13 seq418289 84.2 2e-11 >seq258579 Length=20613 Score = 149 bits (164), Expect = 7e-31 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || ||||| || ||||||||||| || | Sbjct 18969 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCCTCG 19028 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| || | |||| | ||||| || || ||||||||||| ||||||||||| |||||| Sbjct 19029 GATGCAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 19088 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||| || |||||||| || |||| |||| | | ||||| || Sbjct 19089 CAAAGACTGATCTTTGCAGGCAAGCAACTGGAAGATGGACGTATTTTGTCTGACTACAAC 19148 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTC 27625 || |||||||| ||| |||||||||| || ||| | |||| Sbjct 19149 GTTCAAAAGGAGTCCGCTCTTCATCTTGTGTTGAGACTTC 19188 >seq364176 Length=18321 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || ||||| || ||||| ||||| || | Sbjct 5565 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTTG 5506 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| | | |||| | || || || || ||||| ||||| ||||||||||| |||||| Sbjct 5505 GATACAACAGAAAATGTAAACGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 5446 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || |||||||| |||||||| || |||| ||||| | | ||| | || Sbjct 5445 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACCACAAC 5386 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| |||||||||||||| || ||| | |||| |||||| Sbjct 5385 ACTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCACGGTGG 5339 >seq393589 Length=19132 Score = 138 bits (152), Expect = 1e-27 Identities = 167/226 (74%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 |||| || || | ||||| || || || ||||| || ||||| ||||||| | | Sbjct 7846 TGCAGATTTTCATGAAGACCCTGACAGG-AAGACCATCACTCTCAAGGTTGAACCCTTGG 7904 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 ||| || | |||| | ||||| || || ||||||||||| |||||| | || ||||||| Sbjct 7905 ATACAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTTCCCCTGACCAGC 7964 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 | | || || |||||||| |||||||| || |||| ||||| | | ||||| || Sbjct 7965 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACA 8024 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||| |||||||||| || ||| | |||| ||||| Sbjct 8025 TTCAAAAGGAGTCCGCTCTTCATCTTGTGTTGAGACTTCATGGTGG 8070 >seq336898 Length=33758 Score = 129 bits (142), Expect = 7e-25 Identities = 166/228 (73%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || | ||||| || || || | | | || ||||| |||||||| | Sbjct 29648 ATGCAGATTTTCTTGAAGACCCTGACAGGGATGGCCATCACTCTCGAGGTTGAACCCTCG 29707 Query 27466 GATAGCATTGCAAATT-TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | ||| | | ||||| || | ||||||||||| ||||||||||| ||||| Sbjct 29708 GATACAATAGAAAAATGTAAAGGCCAAGAGCCAGGACAAGGAAGGAATTCCTCCTGACCA 29767 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| || || |||||||| |||||||| || |||| ||||| | | ||||| || Sbjct 29768 GCAAACACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 29827 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || ||||||||||| || || | |||| ||||| Sbjct 29828 CATTCAAAAGGAGTCTACTCTTCATCTTGTAGTGAGACTTCATGGTGG 29875 >seq397823 Length=5921 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| |||| || || || ||||| || ||||| ||||| || | Sbjct 1893 ATGCAGATTTTTGTGAAGATCCTGACAGGGAAGACCATCACTCTCGAGGTCGAACCCTCG 1834 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| | | |||| | || || || || || || ||||| | ||||||| | ||||| Sbjct 1833 GATACAACAGAAAATGTAAACGCCAAGATCCAAGATAAGGAAGTAATTCCTTCTAACCAG 1774 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | ||||||||||| |||||||| || |||| ||||| | | ||||| || Sbjct 1773 CAAGGATTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 1714 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| |||||||||||||| | ||| | ||||| | ||| Sbjct 1713 AGTCAAAAGGAGTCCACTCTTCATCTTCTGTTGAGACTTCGTGCTGG 1667 >seq414080 Length=5684 Score = 116 bits (128), Expect = 4e-21 Identities = 165/228 (72%), Gaps = 7/228 (3%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 |||| || || | ||||| ||| || | ||| || |||||||| ||||| | | Sbjct 4525 TGCAGATTTTCATGAAGAC-CTTCTGGGGATGACCATCACTCTTGAAGTTGAACCCTCAG 4583 Query 27467 ATAGCATTGCAAATT-TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| | | ||| | | |||| || || ||||| ||||| ||||||||||| |||||| Sbjct 4584 ATACAACAGAAAAATGTAAAGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 4643 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || |||||||| |||||||| || |||| |||| | ||||| || Sbjct 4644 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTT----GACTACAAC 4699 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT-AGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| |||||||||||||| | | ||| | ||||| ||||| Sbjct 4700 ATTCAAAAGGAGTCCACTCTTCATCTAAATGTTGAGACTTCGTGGTGG 4747 >seq129591 Length=11435 Score = 116 bits (128), Expect = 4e-21 Identities = 147/198 (74%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG-TCAGG 27464 ||||| |||||||| ||||| || | |||||||| || ||||||||||| || ||| | Sbjct 4670 ATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCAAGCTCA-G 4728 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| | || || ||||| | |||| |||| || | ||| |||| Sbjct 4729 TGTCACCATTGAGAATGTCAAAGCCAAAATCAAAGACACTGAGGACATCCTGCCACACCA 4788 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || |||| |||||||| | || || || |||| || ||||| || |||||||||| Sbjct 4789 ACACAGTCTGATTTTTGCAGACAAACAGCT-GAGGGTGGCCGTACTCTCTCAGACTATAA 4847 Query 27585 TGTCCAAAAGGAATCCAC 27602 | |||| || |||||||| Sbjct 4848 TATCCAGAAAGAATCCAC 4865 >seq168090 Length=9538 Score = 105 bits (116), Expect = 8e-18 Identities = 119/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || |||||| | ||| ||||||| || || || ||||| ||| | | Sbjct 8710 AATGCAAATCTTCGTGAAGACGTTGACCAGCAAGACCATCACCCTGGAGGTAGAGCCCAG 8651 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| ||| ||||||| || || ||||| |||| || | |||||| || || Sbjct 8650 TGACATCATCAGGAATGTGAAGGCCAAGATCCAGGATGAGGAAGGCA-TCCTCCCGAACA 8592 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 |||| | || || ||||| || ||||| || || |||| Sbjct 8591 GCAGAGGCTCATCTTTGCAGGCAAGCATCTGGAAGATG 8554 >seq366847 Length=8421 Score = 102 bits (112), Expect = 9e-17 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||| ||| ||||| || || |||||||| | || |||||||| ||| | || Sbjct 1626 ATGCAGATCTGTGTGAAGACCCTGACAGGCAAGACCACCACCCTTGAGGTGGAGACCAGT 1685 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||| ||| | ||||| ||||| || ||||||||||| || | || |||||| Sbjct 1686 GACTCCATAAAGAATGTCAAGGCCAAAATCCAAGACAAGGAGGGTATCCTGCCTGACCAG 1745 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||| ||| |||||| || || || || |||| | | || || ||||| | || Sbjct 1746 CAGCATCTGATTTTTATGGGCAAACAGTGGGAAGATGGTAGAACTCT--CAGACAACAAC 1803 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| || || ||||| || || Sbjct 1804 ATCCAGAAAGAGTCCACCCTACA 1826 >seq80074 Length=6561 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||| |||| | |||||||||||||| ||| ||||| |||||| | | |||| Sbjct 2995 ACCATTATCAATTTGGCTCAGAACTTTGTGGGTAGCAATAATCTGAACCTCTTGCAGCCC 3054 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| ||| |||| |||||||||||| |||| || | || |||||| Sbjct 3055 ATTGGTCAGTTTGGTACCAGGCTGCATGGTGGCAAGGATTCTGCTAGTCCTCGATACATC 3114 Query 32245 TTCAC 32249 ||||| Sbjct 3115 TTCAC 3119 >seq260509 Length=18370 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| || ||||| ||||| ||| | || Sbjct 4509 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACTCTAGAGGTCGAGCCCAGT 4450 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| ||| | || |||||||| || ||||||||||| Sbjct 4449 GACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGG 4406 >seq418289 Length=29330 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 64717 CGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATT 64776 ||| ||| ||| |||||| ||||||||||| ||||||||||| || || || || Sbjct 26663 CGTGTCGTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATA 26722 Query 64777 TTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGAT 64832 |||||||| ||||| || || |||||||| || || | ||||| || || || || Sbjct 26723 TTCTGGCTCAAAAAACGAGGTCTGATGCCCGGCCTCACATTTTCCAATGAACTTAT 26778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567305976297280