Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq366492 127 3e-24 seq375440 93.3 6e-14 >seq366492 Length=15653 Score = 127 bits (140), Expect = 3e-24 Identities = 195/274 (71%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCCC 14336 ||||| |||||||| |||||| | || |||||||| | ||||| || || | ||| Sbjct 5872 GACACATACAGCCCGGACGAGTATCTCTGGGCCACTATTCAGAGGATCCCCGA-AGTCCC 5930 Query 14337 GGGGGGATCCCCGTTC--ACGTCA--AGTACGACACCTCGGACATGTGGGCCAAGGTCAG 14392 ||| || | || | | | || ||||||||| || |||||| || | | ||| Sbjct 5931 AGGG---TCACTGTCCTTAAGCCATAAGTACGACATGTCCGACATGCACGCGATTGCCAG 5987 Query 14393 GTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTG 14452 ||| ||||||||||| |||| || || || || || || |||| |||||||| || Sbjct 5988 GTTTGTCAAGTGGCAGTACTTTGAAGGTGACATTTCCAAGGGCGCCCCCTACCCGCCGTG 6047 Query 14453 CGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAA 14512 | |||| ||||||| | | || | ||| | ||||| | || ||| |||| ||| || Sbjct 6048 CAGCGGCGTCCACGTGCGCTCCGTGTGCGTTTTCGGAGCGGGTGACTTGAACTGGATGTT 6107 Query 14513 GAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 | |||| | ||| |||||||||||||||||||| Sbjct 6108 GCGCGTGCACCACTTGTTCGCCAACAAGTTCGAC 6141 >seq375440 Length=19304 Score = 93.3 bits (102), Expect = 6e-14 Identities = 179/264 (68%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || |||||| |||||| | || || |||||||||||||| | ||| |||| | ||| Sbjct 14145 CCACTGAGCAGAGAAGAGTTAGACTTCCCCATCGCCTACTCTGTGGTGGTCCATGAGAAG 14204 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || || | ||||| || || ||| | || | || ||||| |||||| | ||||||||| Sbjct 14205 ATTGAAAACTTCGAACGGCTGCTGCGAGCTGTGTATGCCCCTCAGAACATATACTGCGTC 14264 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 || ||||| |||||| || |||| || ||| ||||||| ||| Sbjct 14265 CATGTGGATGAGAAGTCCCCAGAAACTTTCAAAGAGGCAGTCAAGGCCATCATTTCCTGC 14324 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 ||||| || || | ||||| | || | ||||| |||| ||||||| | Sbjct 14325 TTCCCAAATGTCTTCATGGCCAGTAAGTTGGTCCGGGTGGTTTACGCCTCCTGGTCCAGG 14384 Query 13911 GTGCAGGCCGACCTCAGCTGCATG 13934 |||||||| ||||| | ||| ||| Sbjct 14385 GTGCAGGCTGACCTGAACTGTATG 14408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655268928957440