Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq397970 334 6e-87
seq273439 176 4e-39
seq397969 149 5e-31
seq408533 102 7e-17
seq344518 89.7 4e-13
seq317162 89.7 4e-13
seq383823 82.4 6e-11
>seq397970
Length=5258
Score = 334 bits (370), Expect = 6e-87
Identities = 487/688 (71%), Gaps = 5/688 (1%)
Strand=Plus/Minus
Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897
|||| || || || || || | || |||||| | |||||| | || | || || |||||
Sbjct 2282 TGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTCAGCAGCTCAATGTGATTCAGGT 2223
Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957
| | ||| || ||||||| |||| ||||| || || || | || || |||| ||| |
Sbjct 2222 AAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGTG 2163
Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017
| |||||||| | || | ||||||||||||||| ||||| || || || ||||| |
Sbjct 2162 CGATCATGTA-----GCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATAT 2108
Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30077
| || ||||||||||| ||||| || || ||||| |||| |||||| ||||| || |
Sbjct 2107 CTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAA 2048
Query 30078 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 30137
|||||||||||| || || |||||||| | ||||| || ||||| || |||| ||
Sbjct 2047 GGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGA 1988
Query 30138 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30197
|||| | ||||| || |||||| | |||| ||| | |||||||| ||||| |
Sbjct 1987 TGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCTA 1928
Query 30198 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30257
| || | || || |||| ||| || |||| || || || |||||||||||||
Sbjct 1927 CTCCTTGATCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACT 1868
Query 30258 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 30317
| || || || || || || | || || ||| | ||| ||| ||| ||||||
Sbjct 1867 GAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCA 1808
Query 30318 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGG 30377
| ||||||| ||| || ||||| |||||||| || || ||||| ||| ||||| || |
Sbjct 1807 AGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAG 1748
Query 30378 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 30437
||||||||| || ||| |||||||||| ||||||| || |||| || || || |
Sbjct 1747 CGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAACAC 1688
Query 30438 TCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACA 30497
||||| || || || ||||| | | | |||| ||| | ||||| || ||||
Sbjct 1687 GTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACA 1628
Query 30498 CGGACAAGACTCCCGTGCCCGTCCTGTC 30525
| |||| | || |||||||| | |||
Sbjct 1627 CCGACAGGGTGCCGGTGCCCGTGCGGTC 1600
>seq273439
Length=4507
Score = 176 bits (194), Expect = 4e-39
Identities = 387/571 (68%), Gaps = 17/571 (3%)
Strand=Plus/Minus
Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897
||||||||| || || || | || ||||| | |||||| | || | || ||||||||
Sbjct 2455 TGGGAAAGGC-CTTGGTTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 2397
Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957
| | ||| || ||||||| |||| ||| | || || || | || || |||| ||| |
Sbjct 2396 AAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTG 2337
Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017
| |||||||| ||||| || | |||||||||| ||| |||| || || || ||| |||
Sbjct 2336 CGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCTGT 2277
Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30077
| || ||||||||||| ||||| || || ||||| || |||||| || || || |
Sbjct 2276 CTCCTGACCTCTGGTACAGCTG-CAGGACAGCTCATGGTTCACCACGTAGAAGTGGCAAA 2218
Query 30078 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 30136
||| |||| | | | || |||| ||| ||||| | ||||| || || |
Sbjct 2217 GGGC--GGCA--GGGTATGA-----GAGG---AAGATCTTT-TGATTCCAAGCACATAGA 2171
Query 30137 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30196
||||| | |||||||| || ||| | |||| ||| | | |||||||| || ||
Sbjct 2170 ATGATTCTTCTGTCTTCAGGTTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTCT 2111
Query 30197 ACCCCCATCCCCGAGTA-GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCA 30255
|| || | || || | | || || |||| || || | ||| ||||||
Sbjct 2110 ACTCCTTGACGTGAATACATTTAAATCCACATCTTTGTATTCAGCCACCAAAGACCTCCA 2051
Query 30256 CTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 30315
||| || | | || || || | || || ||||| ||| || || ||||
Sbjct 2050 CTGAAAGCTATGAACTGGGCCTAAATCCCCTTCTTCTCTGGTGGAGAGTACCAGGCTGTC 1991
Query 30316 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTT 30375
||| ||||||| ||| |||| ||| |||||||| || || ||||| ||| ||||| ||
Sbjct 1990 CAAGAAGTCTCGGGACCCGTGGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTT 1931
Query 30376 GGAGTTTGTGGACCCTCTGACGAACCACAGC 30406
| |||||||| || ||| |||||||||
Sbjct 1930 AGCATTTGTGGAGCCCTTGATCAACCACAGC 1900
>seq397969
Length=7843
Score = 149 bits (164), Expect = 5e-31
Identities = 132/165 (80%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||
Sbjct 7712 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 7653
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| || || |||||||| || ||||||||| | ||||| || || ||||| |||| |
Sbjct 7652 ACACCCAGGCCCATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCACC 7593
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106
||||| ||||| || | |||||||||||| || || |||||||||
Sbjct 7592 ACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAGG 7548
Score = 96.9 bits (106), Expect = 3e-15
Identities = 122/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
||| || |||| || || || |||||||||||||| || || || || || || | ||
Sbjct 4453 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 4394
Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342
|| ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| ||
Sbjct 4393 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 4334
Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
|||||| || || ||||| ||| ||||| || | ||||||||| ||
Sbjct 4333 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 4286
>seq408533
Length=33819
Score = 102 bits (112), Expect = 7e-17
Identities = 116/153 (76%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438
||||||||| || || || || || || || ||||| |||| || || ||||| |
Sbjct 27117 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 27176
Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498
| || || |||||| || || ||||||||||| ||||| |||||||| ||||||| ||
Sbjct 27177 TAAAGATCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 27236
Query 110499 CTGCTTGCC-TCTGACTGAAGACGTAGCGGTCA 110530
||| || || |||| ||||||| || | |||||
Sbjct 27237 CTGTTTACCTTCTG-CTGAAGAAGTTGTGGTCA 27268
>seq344518
Length=1300
Score = 89.7 bits (98), Expect = 4e-13
Identities = 162/233 (70%), Gaps = 12/233 (5%)
Strand=Plus/Plus
Query 110381 GAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCA 110440
||||||| || || || || || || || |||| |||| || || ||||| || |
Sbjct 823 GAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTAATGAGAACTATATTAATTCTGTCCCTTA 882
Query 110441 GAGGTCTATTCTTTTCGGGGATG----GAGAACCAAGTCTTTCTACCCATTATCACCACG 110496
||||| |||||| || || ||| |||||||| || || |||||||| |||||||
Sbjct 883 AAGGTCGATTCTTCTCTGGAATGAATGGAGAACCAGGTTTTCCTACCCATAATCACCAAA 942
Query 110497 TTCTGCTTGCC-TCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTT 110555
||||| || || |||| ||||||| || | ||||| | | || | | | || ||
Sbjct 943 TTCTGTTTACCTTCTG-CTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCATT 1001
Query 110556 GCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGT 110608
| | ||||| |||| ||||| || | ||| || |||||||||||||
Sbjct 1002 CCTGA-----GCAGG-GGCCAGGGCAGGTCCCTGTTCTTGCCGATGCCCATGT 1048
>seq317162
Length=29175
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 8/228 (4%)
Strand=Plus/Minus
Query 110410 CTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAAC 110469
|| ||||| |||| || || ||||| | | ||||| |||||| || || |||||||||
Sbjct 9459 CTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGAATGGAGAAC 9400
Query 110470 CAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCGGTC 110529
|| || || |||||||| |||||| ||||| || ||| |||||||| || | ||||
Sbjct 9399 CATGTTTTCCTACCCATAATCACCGAATTCTGTTTACCTTCTACTGAAGAGGTTGTGGTC 9340
Query 110530 AAGGCTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATCTCCG 110589
| | | || | | | || || | || || |||| ||||| || |||
Sbjct 9339 ATTCTTTGGAAATACCTGTATTCATTCCTGAG------CGGGGGCCAGGGCAGGTCCCCG 9286
Query 110590 TTGTTCCCGATGCCCATG-TCTGGACACGCGGCCACGATACCGTTCAG 110636
|| || || ||||||||| ||||| || | || ||||| | ||| ||
Sbjct 9285 TTCTTGCCAATGCCCATGTTCTGG-GACACAGCAACGATGCAGTTTAG 9239
>seq383823
Length=18616
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460
|| || || || ||||| |||| || || ||||| | | ||||| |||||| || ||
Sbjct 9583 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 9524
Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508
||||||||||| || || |||||||| ||||||| ||||| || |||
Sbjct 9523 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCT 9476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404223448084848
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