Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq397970 334 6e-87 seq273439 176 4e-39 seq397969 149 5e-31 seq408533 102 7e-17 seq344518 89.7 4e-13 seq317162 89.7 4e-13 seq383823 82.4 6e-11 >seq397970 Length=5258 Score = 334 bits (370), Expect = 6e-87 Identities = 487/688 (71%), Gaps = 5/688 (1%) Strand=Plus/Minus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 |||| || || || || || | || |||||| | |||||| | || | || || ||||| Sbjct 2282 TGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTCAGCAGCTCAATGTGATTCAGGT 2223 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | ||| || ||||||| |||| ||||| || || || | || || |||| ||| | Sbjct 2222 AAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGTG 2163 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | |||||||| | || | ||||||||||||||| ||||| || || || ||||| | Sbjct 2162 CGATCATGTA-----GCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATAT 2108 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30077 | || ||||||||||| ||||| || || ||||| |||| |||||| ||||| || | Sbjct 2107 CTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAA 2048 Query 30078 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 30137 |||||||||||| || || |||||||| | ||||| || ||||| || |||| || Sbjct 2047 GGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGA 1988 Query 30138 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30197 |||| | ||||| || |||||| | |||| ||| | |||||||| ||||| | Sbjct 1987 TGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCTA 1928 Query 30198 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30257 | || | || || |||| ||| || |||| || || || ||||||||||||| Sbjct 1927 CTCCTTGATCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACT 1868 Query 30258 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 30317 | || || || || || || | || || ||| | ||| ||| ||| |||||| Sbjct 1867 GAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCA 1808 Query 30318 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGG 30377 | ||||||| ||| || ||||| |||||||| || || ||||| ||| ||||| || | Sbjct 1807 AGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAG 1748 Query 30378 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 30437 ||||||||| || ||| |||||||||| ||||||| || |||| || || || | Sbjct 1747 CGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAACAC 1688 Query 30438 TCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACA 30497 ||||| || || || ||||| | | | |||| ||| | ||||| || |||| Sbjct 1687 GTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACA 1628 Query 30498 CGGACAAGACTCCCGTGCCCGTCCTGTC 30525 | |||| | || |||||||| | ||| Sbjct 1627 CCGACAGGGTGCCGGTGCCCGTGCGGTC 1600 >seq273439 Length=4507 Score = 176 bits (194), Expect = 4e-39 Identities = 387/571 (68%), Gaps = 17/571 (3%) Strand=Plus/Minus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 ||||||||| || || || | || ||||| | |||||| | || | || |||||||| Sbjct 2455 TGGGAAAGGC-CTTGGTTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 2397 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | ||| || ||||||| |||| ||| | || || || | || || |||| ||| | Sbjct 2396 AAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTG 2337 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | |||||||| ||||| || | |||||||||| ||| |||| || || || ||| ||| Sbjct 2336 CGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCTGT 2277 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30077 | || ||||||||||| ||||| || || ||||| || |||||| || || || | Sbjct 2276 CTCCTGACCTCTGGTACAGCTG-CAGGACAGCTCATGGTTCACCACGTAGAAGTGGCAAA 2218 Query 30078 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 30136 ||| |||| | | | || |||| ||| ||||| | ||||| || || | Sbjct 2217 GGGC--GGCA--GGGTATGA-----GAGG---AAGATCTTT-TGATTCCAAGCACATAGA 2171 Query 30137 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30196 ||||| | |||||||| || ||| | |||| ||| | | |||||||| || || Sbjct 2170 ATGATTCTTCTGTCTTCAGGTTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTCT 2111 Query 30197 ACCCCCATCCCCGAGTA-GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCA 30255 || || | || || | | || || |||| || || | ||| |||||| Sbjct 2110 ACTCCTTGACGTGAATACATTTAAATCCACATCTTTGTATTCAGCCACCAAAGACCTCCA 2051 Query 30256 CTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 30315 ||| || | | || || || | || || ||||| ||| || || |||| Sbjct 2050 CTGAAAGCTATGAACTGGGCCTAAATCCCCTTCTTCTCTGGTGGAGAGTACCAGGCTGTC 1991 Query 30316 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTT 30375 ||| ||||||| ||| |||| ||| |||||||| || || ||||| ||| ||||| || Sbjct 1990 CAAGAAGTCTCGGGACCCGTGGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTT 1931 Query 30376 GGAGTTTGTGGACCCTCTGACGAACCACAGC 30406 | |||||||| || ||| ||||||||| Sbjct 1930 AGCATTTGTGGAGCCCTTGATCAACCACAGC 1900 >seq397969 Length=7843 Score = 149 bits (164), Expect = 5e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 7712 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 7653 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || ||||||||| | ||||| || || ||||| |||| | Sbjct 7652 ACACCCAGGCCCATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCACC 7593 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 ||||| ||||| || | |||||||||||| || || ||||||||| Sbjct 7592 ACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAGG 7548 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| || || || |||||||||||||| || || || || || || | || Sbjct 4453 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 4394 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| || Sbjct 4393 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 4334 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| || || ||||| ||| ||||| || | ||||||||| || Sbjct 4333 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 4286 >seq408533 Length=33819 Score = 102 bits (112), Expect = 7e-17 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 27117 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 27176 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | || || |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 27177 TAAAGATCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 27236 Query 110499 CTGCTTGCC-TCTGACTGAAGACGTAGCGGTCA 110530 ||| || || |||| ||||||| || | ||||| Sbjct 27237 CTGTTTACCTTCTG-CTGAAGAAGTTGTGGTCA 27268 >seq344518 Length=1300 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 110381 GAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCA 110440 ||||||| || || || || || || || |||| |||| || || ||||| || | Sbjct 823 GAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTAATGAGAACTATATTAATTCTGTCCCTTA 882 Query 110441 GAGGTCTATTCTTTTCGGGGATG----GAGAACCAAGTCTTTCTACCCATTATCACCACG 110496 ||||| |||||| || || ||| |||||||| || || |||||||| ||||||| Sbjct 883 AAGGTCGATTCTTCTCTGGAATGAATGGAGAACCAGGTTTTCCTACCCATAATCACCAAA 942 Query 110497 TTCTGCTTGCC-TCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTT 110555 ||||| || || |||| ||||||| || | ||||| | | || | | | || || Sbjct 943 TTCTGTTTACCTTCTG-CTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCATT 1001 Query 110556 GCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGT 110608 | | ||||| |||| ||||| || | ||| || ||||||||||||| Sbjct 1002 CCTGA-----GCAGG-GGCCAGGGCAGGTCCCTGTTCTTGCCGATGCCCATGT 1048 >seq317162 Length=29175 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 110410 CTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAAC 110469 || ||||| |||| || || ||||| | | ||||| |||||| || || ||||||||| Sbjct 9459 CTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGAATGGAGAAC 9400 Query 110470 CAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCGGTC 110529 || || || |||||||| |||||| ||||| || ||| |||||||| || | |||| Sbjct 9399 CATGTTTTCCTACCCATAATCACCGAATTCTGTTTACCTTCTACTGAAGAGGTTGTGGTC 9340 Query 110530 AAGGCTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATCTCCG 110589 | | | || | | | || || | || || |||| ||||| || ||| Sbjct 9339 ATTCTTTGGAAATACCTGTATTCATTCCTGAG------CGGGGGCCAGGGCAGGTCCCCG 9286 Query 110590 TTGTTCCCGATGCCCATG-TCTGGACACGCGGCCACGATACCGTTCAG 110636 || || || ||||||||| ||||| || | || ||||| | ||| || Sbjct 9285 TTCTTGCCAATGCCCATGTTCTGG-GACACAGCAACGATGCAGTTTAG 9239 >seq383823 Length=18616 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 9583 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 9524 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || || |||||||| ||||||| ||||| || ||| Sbjct 9523 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCT 9476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404223448084848