Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq418776 91.5 1e-13 seq411564 87.8 2e-12 seq359707 84.2 2e-11 seq233743 84.2 2e-11 >seq418776 Length=96061 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| ||||| | || || || || ||||| |||| Sbjct 54879 ATGCAGATCTTCGTGAAGACCCTGANNNGCAAGACCATCACCCTGGAGGTGGA---GTCC 54935 Query 27048 ---GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||| | || |||| || || || || || || || |||||||| || || || Sbjct 54936 AGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGAC 54995 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 | ||| | | || | || |||||||| ||||||| | | || |||| |||||| Sbjct 54996 TAGCAGAGGCTTATCTTTGCAGGCAAACAGCTGGAAGATGGCTGCACTCTTTCTGATTAC 55055 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| || || ||||| || || || |||| | ||| || |||||||| Sbjct 55056 AACATCCAGAAAGAGTCAACATTGCACCTGGTCCTCCGTCTGAGGGGTGGC 55106 >seq411564 Length=61085 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || | || || ||||| |||||| | || || || || ||||| || Sbjct 40671 ATGCAGATCTTCGGGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 40612 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCC--GATC 27105 ||| | || ||| || || || || || || || |||||||| || ||| || | Sbjct 40611 GACACCATCAAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCCCCGACC 40552 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||| | | || | || |||||||| |||||||| | || |||| ||||||| Sbjct 40551 AGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGACGGCCGCACTATTTCTGATTACA 40492 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||| || || ||||| ||| | || |||| | ||| | |||||||| Sbjct 40491 ACATCCAGAAAGAGTCTACCCTGCACCTGGTCCTCCGTCTAAGGGGTGGC 40442 >seq359707 Length=5412 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || || || ||||| |||| Sbjct 2792 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGGA---GTCC 2736 Query 27048 ---GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||| | || ||| || || || || || || ||||||||||| || || || Sbjct 2735 AGTGACACCATCAAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGAC 2676 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||| | | || | || |||||||| ||||||| | || ||| |||||| Sbjct 2675 CAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCACACTCCTTCTGATTAC 2616 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 | ||| || || ||||| ||| | || |||| | ||| || |||||||| Sbjct 2615 AGCATCCAGAAAGAGTCTACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 2565 >seq233743 Length=26381 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||| | || ||||||||||| || || ||||| ||| | | || | || |||||| Sbjct 21102 AAGATTGAGGATAAAGAAGGCATCCCCCCTGATCAGCAGAGGCTCATCTTTGCAGGCAAA 21161 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || |||||||| | || |||| ||||||| ||| || || ||||||||| | || Sbjct 21162 CAGCTGGAAGACGGCCGCACTCTTTCTGATTACAGCATCCAGAAAGAGTCGACCCTGCAC 21221 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGC 27215 |||| | ||| || |||||||| Sbjct 21222 CTGGTCCTCCGTCTGAGGGGTGGC 21245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432687690983492