Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq397970 434 9e-117 seq273439 219 4e-52 seq397969 159 3e-34 >seq397970 Length=5258 Score = 434 bits (480), Expect = 9e-117 Identities = 586/814 (72%), Gaps = 7/814 (1%) Strand=Plus/Plus Query 34139 GGCTACCGGAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCC 34198 |||| ||||||| ||||| || || || || ||||| || |||||||||| ||||| Sbjct 1585 GGCTTTCGGAAGGATGACCGCACGGGCACCGGCACCCTGTCGGTGTTCGGCATGCAGGCG 1644 Query 34199 CGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGC 34258 || |||| ||| | | |||||||| |||||||| || |||||||| | ||| ||||| Sbjct 1645 CGCTACAGCCTGAGAGATGAATTTCCTCTGCTGACAACCAAACGTGTTTTCTGCAAGGGT 1704 Query 34259 GTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCC 34318 || |||||| |||||||||| | | ||| |||| ||| | |||||||| || ||| Sbjct 1705 GTTTCGGAGGAGTTGCTGTGGTTTATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCC 1764 Query 34319 CGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC 34378 ||| ||||| |||||||| || | ||||| |||||||| |||||| | ||| ||| Sbjct 1765 AAGGGAGTGAAAATCTGGGATGCCAATGGGTCCCGAGACTTCTTGGACAGCCTGGGATTC 1824 Query 34379 -CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGG 34437 ||| | | || |||| || || ||||| || || || || |||||||| || ||||| Sbjct 1825 TCCACCAGAGCAGAAGGG-GATTTAGGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGG 1883 Query 34438 GGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTA 34497 ||| || || | | || | || ||||| | || |||| || || ||||| | Sbjct 1884 GGCCGAATACAAAGATATGGATTCAGATTATTCAGATCAAGGAGTAGATCAACTGCAAAA 1943 Query 34498 CGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAA 34557 |||| ||||| | || |||||||| |||||||| ||| | |||| || ||||| Sbjct 1944 AGTGACTGACACAATCAAAACCAACCCTGACGACAGAAGAATCATCCTGTGTGCTTGGAA 2003 Query 34558 CCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT 34617 || || ||||||||||| ||||| || |||||||||||| |||| ||||| |||||||| Sbjct 2004 TCCAAAAGATCTCCCTCTCATGGCCCTACCCCCGTGCCACGCCCTTTGCCAGTTCTACGT 2063 Query 34618 CGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGT 34677 | ||| || ||||||||||||||||| || || | || ||||| ||||| | || || Sbjct 2064 GGTGAACGGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGAGATATGGGCCTGGGTGT 2123 Query 34678 GCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTT 34737 ||| |||||||| || || ||||| |||| ||||||||||| || || ||| | Sbjct 2124 GCCCTTCAACATCGCCAGCTACGCCCTGC-----TACATGATCGCACACATCACGGGCCT 2178 Query 34738 GGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGA 34797 | || || || | || || || ||||| ||||| || || |||||||| ||||| || Sbjct 2179 GAAGCCAGGTGACTTTGTACACACTTTGGGAGATGCACACATTTACCTGAATCACATTGA 2238 Query 34798 GCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCG 34857 || ||| || ||||| || ||||| || | || |||||| |||||| ||| |||| Sbjct 2239 GCTGCTGAAAATTCAGCTTCAGCGAGAACCAAGGCCTTTCCCCAAGCTCAGAATCCTTCG 2298 Query 34858 AGCCGTCACCTCAATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTACCGGCC 34917 | || ||| |||||||| | | || ||||| | | ||||| ||| || Sbjct 2299 AAAAGTTGAGAAAATTGATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCC 2358 Query 34918 GCACTCGGCCCTGAAGATGGAGTTGGCGGTGTAG 34951 ||| || | | || ||||| |||| || ||| Sbjct 2359 TCACCCGACTATTAAAATGGAAATGGCTGTTTAG 2392 Score = 434 bits (480), Expect = 9e-117 Identities = 586/814 (72%), Gaps = 7/814 (1%) Strand=Plus/Minus Query 6394 CTACACCGCCAACTCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGTC 6453 ||| || |||| ||||| || | | || ||| || ||| ||||| | | ||||| Sbjct 2392 CTAAACAGCCATTTCCATTTTAATAGTCGGGTGAGGATTGTAGCCTTCAATCTGAAAGTC 2333 Query 6454 CTCGCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAACGG 6513 || | | |||||||| ||| || ||||| ||| |||||| |||||| || Sbjct 2332 TTCAGCCTTGAAGTCATCAATTTTCTCAACTTTTCGAAGGATTCTGAGCTTGGGGAAAGG 2273 Query 6514 TCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGC 6573 | || ||||| || ||||| || ||| |||| ||||| |||||||| || || || Sbjct 2272 CCTTGGTTCTCGCTGAAGCTGAATTTTCAGCAGCTCAATGTGATTCAGGTAAATGTGTGC 2213 Query 6574 ATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATGTA 6633 ||| ||||| || || || | || || || || ||| || || ||||||||||| Sbjct 2212 ATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGTGCGATCATGTA 2153 Query 6634 CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCG 6693 |||| ||||| || || |||||||| ||||| || | ||||| ||||| || | Sbjct 2152 -----GCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATATCTCCTGACCT 2098 Query 6694 TTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCA 6753 || || ||||||||||||||||| || ||| | |||||||| ||||| |||| |||||| Sbjct 2097 CTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCGTGGCA 2038 Query 6754 CGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCT 6813 |||||| || ||||| ||||||||||| || || ||||| || |||| | ||| ||||| Sbjct 2037 CGGGGGTAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTCT 1978 Query 6814 GTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCC 6873 ||| |||||||| || | ||||| |||| | ||||| || || |||| || | Sbjct 1977 GTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCTACTCCTTGATC 1918 Query 6874 CGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTA 6933 ||||| || | || | | || || |||||||| || |||||||| || || || Sbjct 1917 TGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATA 1858 Query 6934 GACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTC 6992 || ||||| || || |||| || | | ||| ||| ||| | |||||| ||||||| Sbjct 1857 AACTGGGCCTAAATC-CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTC 1799 Query 6993 GAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 | ||||| | || |||||||| ||||| ||| ||| || |||||||| | ||| |||| Sbjct 1798 GGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGG 1739 Query 7053 CCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCG 7112 ||| | | |||||||||| |||||| || ||||| ||| | |||||||| || | Sbjct 1738 ATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAACACGTTTGGTTG 1679 Query 7113 TCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGG 7172 ||||||| |||||||| | | ||| |||| || ||||| |||||||||| || |||| Sbjct 1678 TCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACACCGACAGGG 1619 Query 7173 TCCCCGTCCCGGTCCGGTCCCCCTTCCGGTAGCC 7206 | || || || || ||||| ||||||| |||| Sbjct 1618 TGCCGGTGCCCGTGCGGTCATCCTTCCGAAAGCC 1585 >seq273439 Length=4507 Score = 219 bits (242), Expect = 4e-52 Identities = 511/762 (67%), Gaps = 28/762 (4%) Strand=Plus/Plus Query 34095 GGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGGAAGGGGG 34154 ||||| |||||| | | |||| | || |||||| | |||| | |||||| | Sbjct 1728 GGGAGCTGCAGTACCGGGGTCAGATTTAGCACATCCTCCGCTGCGGCTTC-GGAAGGATG 1786 Query 34155 ACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGG 34214 ||| || | || || |||| | || || | ||||||| | ||| ||| | | Sbjct 1787 ACCACGCCCGCACCGGCTCCCTGACGATGCTCCTCTCACAGGCGCACGACAGCCTGAGAG 1846 Query 34215 GCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGC 34274 ||||||| |||||||| |||| |||| | ||||||||| | || |||||| Sbjct 1847 ATGAATTTCGTCTGCTGACA--GAAAAGTGTTTTCTGGAAGGGTTTTTGGGACGAGCTG- 1903 Query 34275 TGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCT 34334 ||||| | | ||| |||| || | |||||||| || ||| ||| ||||| |||| Sbjct 1904 --TGGTTGATCAAGGGCTCCACAAATGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATCT 1961 Query 34335 GGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGG 34394 |||| || |||||||| |||||||| |||||| | || || | | | || || | Sbjct 1962 GGGATGCCCACGGGTCCCGAGACTTCTTGGACAGCCTGGTACTCTCCACCAGAGAAGAAG 2021 Query 34395 GCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGG-GGCGGAGTATCGGG-- 34451 | || || ||||| || | | || |||||||| |||||| ||| || || | Sbjct 2022 GGGATTTAGGCCCAGTTCATAGCTTTCAGTGGAGGT-CTTTGGTGGCTGAATACAAAGAT 2080 Query 34452 --GGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACAC 34509 ||| || | ||||| | || |||| ||||| ||||| | ||||| ||||| Sbjct 2081 GTGGATTTAAATG---TATTCACGTCAAGGAGTAGACCAACTGCAAAAGGTGATTGACAC 2137 Query 34510 CTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCT 34569 | || || ||||| |||||||| ||| | | || || ||||| | ||| |||| Sbjct 2138 AATCAAAACCAAACCTGAAGACAGAAGAATCATTCTATGTGCTTGGAATCAAAAG-ATCT 2196 Query 34570 CCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGA 34629 ||||| || || |||| | ||| ||||| |||||||| | ||| || Sbjct 2197 TCCTCTCATA---------CCCTGCCGC--CCTTTGCCACTTCTACGTGGTGAACCATGA 2245 Query 34630 GCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACAT 34689 |||||||||| |||| || || | || ||||||| ||| | || ||| | |||||| | Sbjct 2246 GCTGTCCTGC-AGCTGTACCAGAGGTCAGGAGACAGGGGCCTGGGTGTGTCCTTCAACGT 2304 Query 34690 TGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGA 34749 || || || || |||||||| ||||||||||| || || || || || || || Sbjct 2305 CGCCAGCTATGCCCTGCTCACCTACATGATCGCACACATCACAGGCCTGAAGCCAGGTGA 2364 Query 34750 GCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGAT 34809 || || || ||||| ||||| || || |||||| | ||||| |||| ||| || Sbjct 2365 CTCTGTACACACTTTGGGAGATGCACACATTTACCTGGATCACATTGAGCTGCTGAAAAT 2424 Query 34810 CCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851 ||||| || |||| || | || ||||| |||||||||| Sbjct 2425 GCAGCTTCAGGGAGAACCAAGGCCTTTCCCAAAGCTCAAAAT 2466 Score = 219 bits (242), Expect = 4e-52 Identities = 511/762 (67%), Gaps = 28/762 (4%) Strand=Plus/Minus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 |||||||||| ||||| || | || |||| || ||||| || ||| |||| ||| Sbjct 2466 ATTTTGAGCTTTGGGAAAGGCCTTGGTTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATG 2407 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || | |||||| || || ||||| ||||| || || || || || || || || Sbjct 2406 TGATCCAGGTAAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCT 2347 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 || || ||||||||||| |||||||| || || || || | |||||| | ||| || Sbjct 2346 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCC 2287 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAG 6733 | ||| ||||||| || | || || |||| |||||||||||| ||| | |||||| Sbjct 2286 AGGCCCCTGTCTCCTGACCTCTGGTACAGCT-GCAGGACAGCTCATGGTTCACCACGTAG 2228 Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793 || ||||| ||| | |||| || || ||||| |||| ||| | ||||| Sbjct 2227 AAGTGGCAAAGG--GCGGCAGGG---------TATGAGAGGAAGAT-CTTTTGATTCCAA 2180 Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC 6853 || || | | ||| |||||||| ||||| || || | ||||| ||||| | ||| Sbjct 2179 GCACATAGAATGATTCTTCTGTCTTCAGGTTTGGTTTTGATTGTGTCAATCACCTTTTGC 2120 Query 6854 AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCC----CCCGATACTCCGCC-C 6908 || ||||| |||| || | ||||| | || ||| | || || ||| | Sbjct 2119 AGTTGGTCTACTCCTTGACGTGAATA---CATTTAAATCCACATCTTTGTATTCAGCCAC 2063 Query 6909 CAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGA 6968 ||||| |||||||| || | | || ||||| || || || || || | | | || Sbjct 2062 CAAAG-ACCTCCACTGAAAGCTATGAACTGGGCCTAAATCCCCTTCTTCTCTGGTGGAGA 2004 Query 6969 ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGG 7028 || | |||||| |||||||| |||||||| || |||||||| ||||| ||| || Sbjct 2003 GTACCAGGCTGTCCAAGAAGTCTCGGGACCCGTGGGCATCCCAGATTTTCACTCCCTTGG 1944 Query 7029 ACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGC 7088 | || |||||||| | || |||| ||| | | ||||| |||||| || | | Sbjct 1943 AAGACAGCTCCTTAGCATTTGTGGAGCCCTTGATCAACCA---CAGCTCGTCCCAAAAAC 1887 Query 7089 CCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGG 7148 |||||||| | |||| |||| |||||||| ||||||| | | ||| ||| | | Sbjct 1886 CCTTCCAGAAAACACTTTTC--TGTCAGCAGACGAAATTCATCTCTCAGGCTGTCGTGCG 1829 Query 7149 CCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGGTAGCCCT 7208 |||||| | || || | |||| || || | || |||| |||||| | |||| Sbjct 1828 CCTGTGAGAGGAGCATCGTCAGGGAGCCGGTGCGGGCGTGGTCATCCTTCC-GAAGCCGC 1770 Query 7209 CCCTGAGGATCCGCGCCACCTGATACAGATACTGCCACTCCC 7250 | |||||| || | |||| | | |||||| ||||| Sbjct 1769 AGCGGAGGATGTGCTAAATCTGACCCCGGTACTGCAGCTCCC 1728 >seq397969 Length=7843 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||||| || ||||| || |||||||||||| |||| ||||| |||||||| | ||| Sbjct 7540 GATCTCCCCCTCATGGCCCTACCCCCGTGCCACGCCCTTTGCCAGTTCTACGTGGTGAAC 7599 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| | || | || ||||||||||| | || ||||| ||| Sbjct 7600 GGTGAGCTGTCCTGCCAGCTGTTCCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTC 7659 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| |||||||| ||||||||||| || Sbjct 7660 AACATCGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 7700 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || || |||||||| ||||| || | ||| Sbjct 7700 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 7641 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || | || | ||||||||||||||||| || ||| | |||||||| ||| Sbjct 7640 ATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 7581 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| |||||||||||| || ||||| || |||||||| Sbjct 7580 CAAAGGGCGTGGCACGGGGGTAGGGCCATGAGGGGGAGATC 7540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445900931263680