Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq364176 96.9 2e-15 seq258579 96.9 2e-15 seq336898 93.3 3e-14 seq393589 89.7 3e-13 seq418776 84.2 1e-11 seq414080 82.4 5e-11 >seq364176 Length=18321 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| ||||| || || ||||||||||| || || || Sbjct 5568 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 5509 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| || |||| |||| || || || || ||||| | || || || Sbjct 5508 TTGGATACAACAGAAAATGTAAACGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 5449 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | ||| ||||| || || Sbjct 5448 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACCAC 5389 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||| ||||| |||||||| | ||| | || || || Sbjct 5388 AACACTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 5351 >seq258579 Length=20613 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| ||||| || || |||||||| || || || || Sbjct 18966 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCC 19025 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| | | |||| |||| || || ||||| ||||| | || || || Sbjct 19026 TCGGATGCAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 19085 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | ||| | ||| || ||| Sbjct 19086 CAGCAAAGACTGATCTTTGCAGGCAAGCAACTGGAAGATGGACGTATTTTGTCTGACTAC 19145 Query 23788 AACATACAAAAAGAGTCC 23805 ||| | ||||| |||||| Sbjct 19146 AACGTTCAAAAGGAGTCC 19163 >seq336898 Length=33758 Score = 93.3 bits (102), Expect = 3e-14 Identities = 142/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | || ||||| || || | | ||||||||||| ||||| || Sbjct 29645 AATATGCAGATTTTCTTGAAGACCCTGACAGGGATGGCCATCACTCTCGAGGTTGAACCC 29704 Query 23668 ACGGACACTGTTGAAATAT-TAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | |||| || |||| || | ||||| ||||| | || || || Sbjct 29705 TCGGATACAATAGAAAAATGTAAAGGCCAAGAGCCAGGACAAGGAAGGAATTCCTCCTGA 29764 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || | || ||||| ||||| ||||||||||| | ||| ||||| || || Sbjct 29765 CCAGCAAACACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 29824 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| ||||| ||||| || Sbjct 29825 CAACATTCAAAAGGAGTCTAC 29845 >seq393589 Length=19132 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 ||||||||||| | || ||||| || |||| | | ||||||||| | ||||| || || Sbjct 7846 TGCAGATTTTCATGAAGACCCTGACAGGAAGACC-ATCACTCTCAAGGTTGAACCCTTGG 7904 Query 23672 ACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 | || | |||| |||| || || ||||| ||||| | | || || || | Sbjct 7905 ATACAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTTCCCCTGACCAGC 7964 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 | | | || ||||| ||||| ||||||||||| | ||| ||||| || ||||||| Sbjct 7965 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACA 8024 Query 23792 TACAAAAAGAGTCC 23805 | ||||| |||||| Sbjct 8025 TTCAAAAGGAGTCC 8038 >seq418776 Length=96061 Score = 84.2 bits (92), Expect = 1e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| | | || || ||||| || || || || |||| Sbjct 54879 ATGCAGATCTTCGTGAAGACCCTGANNNGCAAGACCATCACCCTGGAGGTGGAGTCCAGT 54938 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | || || ||||| | || || || | Sbjct 54939 GACACCATCGAGAATGTGAAGGCCAAGA-TCCAGGATAAGGAAGGCATCCCCCCTGACTA 54997 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| |||||||| |||||||| | ||||| | |||||||| Sbjct 54998 GCAGAGGCTTATCTTTGCAGGCAAACAGCTGGAAGATGGCTGCACTCTTTCTGATTACAA 55057 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 ||| || |||||||| ||||| || Sbjct 55058 CATCCAGAAAGAGTCAACATTGCA 55081 >seq414080 Length=5684 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 ||||||||||| | || ||| || |||| | | |||||||| |||||||| || | | Sbjct 4525 TGCAGATTTTCATGAAGACCTTCTGGGGATGACC-ATCACTCTTGAAGTTGAACCCTCAG 4583 Query 23672 ACACTGTTGAAATAT-TAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 | || |||| || |||| || || || || ||||| | || || || || Sbjct 4584 ATACAACAGAAAAATGTAAAGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 4643 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| ||||| ||||||||||| | | | ||||| || |||||| Sbjct 4644 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTT----GACTACAAC 4699 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| |||||||| Sbjct 4700 ATTCAAAAGGAGTCCAC 4716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336273464813552