Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq258579 150 4e-31 seq393589 140 8e-28 seq336898 131 4e-25 seq377817 129 1e-24 seq418776 120 7e-22 seq411564 118 3e-21 seq397823 118 3e-21 seq350746 105 2e-17 seq378590 91.5 3e-13 seq309868 87.8 4e-12 seq411253 86.0 1e-11 seq366847 84.2 5e-11 >seq258579 Length=20613 Score = 150 bits (166), Expect = 4e-31 Identities = 167/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553 ||||||||| ||||| || |||| ||| || ||||| || ||||| || | |||| | | Sbjct 19188 GAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATAC 19129 Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 |||||||| || ||||| || || ||||| |||| ||| ||||| || ||||| |||| Sbjct 19128 GTCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTT 19069 Query 225614 CCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673 ||||||| |||||||| ||| ||| ||| || | || |||| ||| || || | | Sbjct 19068 CCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTCAAGAG 19009 Query 225674 TGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||| ||||| ||||||| || || | ||| | ||||| || Sbjct 19008 TGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 18966 >seq393589 Length=19132 Score = 140 bits (154), Expect = 8e-28 Identities = 163/219 (74%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553 ||||||||| ||||| || |||| ||| || ||||| | ||||| || | |||||| | Sbjct 8063 GAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 8004 Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 |||||||| || ||||| ||||| ||||| |||| ||| ||||| || | ||| |||| Sbjct 8003 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAAATTCCTT 7944 Query 225614 CCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673 ||||||| |||||||| ||| ||| ||| || || || ||| ||| || | | | Sbjct 7943 CCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTTGAGAG 7884 Query 225674 TGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712 |||| ||||| || |||| || || ||||| | |||| Sbjct 7883 TGATGGTCTT-CCTGTCAGGGTCTTCATGAAAATCTGCA 7846 >seq336898 Length=33758 Score = 131 bits (144), Expect = 4e-25 Identities = 164/224 (73%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553 ||||||||| ||||| || ||||| || || ||||| | ||||| || | |||||| | Sbjct 29868 GAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 29809 Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 |||||||| || ||||| ||||| ||||| ||| ||| ||||| || ||||| |||| Sbjct 29808 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTGTTTGCTGGTCAGGAGGAATTCCTT 29749 Query 225614 CCTTGTCTTGGATCTTTTGCTTCACA-GCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||| ||| |||| ||| ||| ||| || || || |||| ||| || || | Sbjct 29748 CCTTGTCCTGGCTCTTGGCCTTTACATTTTTCTATTGTATCCGAGGGTTCAACCTCGAGA 29689 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| | | | || |||| || || | ||| | ||||| || Sbjct 29688 GTGATGGCCATCCCTGTCAGGGTCTTCAAGAAAATCTGCATATT 29645 >seq377817 Length=34012 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||||||||| | | ||||| || || ||||| || ||||||||| | ||||| Sbjct 14774 CCAAATTTACAACGTGGTAGTAACGGCCCACGCATTTGTAATAATTTTCTTTATAGTTAT 14715 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || ||||| || ||||| || | || || ||||| ||||| || || | Sbjct 14714 ACCCATTATAATTGGCGGGTTTGGAAACTGGCTAGTACCCTTAATAATTGGGGCGCCCAA 14655 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTC 7729 |||||||||||| | | |||||||| ||||| |||||||| |||||||| |||| Sbjct 14654 TATGGCTTTTCCCCGTATAAACAATATGAGTTTCTGATTACT----CCTTCCTTCTTTC 14600 >seq418776 Length=96061 Score = 120 bits (132), Expect = 7e-22 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| | || || ||||| |||| |||||||| | | ||| | |||||| Sbjct 55090 AGGACCAGGTGCAATGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCT 55031 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || |||||||| | || | ||| || || || |||||||| || Sbjct 55030 TCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTAGTCAGGGGGGATGCCTTCCTTATCC 54971 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 54970 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTC 54911 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||| ||| || || | ||| | ||||| Sbjct 54910 TTGCNNNTCAGGGTCTTCACGAAGATCTGCAT 54879 >seq411564 Length=61085 Score = 118 bits (130), Expect = 3e-21 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || ||||| |||| |||||||| | | ||| | || ||| Sbjct 40458 AGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCGGCCGTCT 40517 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGA--ATACCTTCCTTGT 225619 || ||||| || || || ||||| || | || |||||||| || || |||||||| | Sbjct 40518 TCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGGGATGCCTTCCTTAT 40577 Query 225620 CTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 | |||||||| ||||||| | ||||||||| || ||||| || | ||||| | Sbjct 40578 CCTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 40637 Query 225680 TCTTGCCCGTCA 225691 |||||||||||| Sbjct 40638 TCTTGCCCGTCA 40649 >seq397823 Length=5921 Score = 118 bits (130), Expect = 3e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| | ||| || |||||||| || ||||| ||||| || | |||||| Sbjct 1672 ACGAAGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGACTGTTGTAGTCAGACAAAGT 1731 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| ||||| || || | || ||| |||| | ||||| | Sbjct 1732 ACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCCTTGCTGGTTAGAAGGAATTAC 1791 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||||||||| || ||| ||| | || || |||| ||| || || | Sbjct 1792 TTCCTTATCTTGGATCTTGGCGTTTACATTTTCTGTTGTATCCGAGGGTTCGACCTCGAG 1851 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||| ||||| || |||| Sbjct 1852 AGTGATGGTCTTCCCTGTCA 1871 >seq350746 Length=65213 Score = 105 bits (116), Expect = 2e-17 Identities = 130/175 (74%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACG-GCGCATGCCTTTGTTATGATTTTCTTTTTTGTTA 7609 |||| | |||||| ||| || || | || || || ||||| || || || ||| | || | Sbjct 28094 CCAAATCTACAAC-TTACTAGTAAGAGCCCACGCGTTTGTAATAATCTTTTTTATAGTCA 28152 Query 7610 TGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTG 7669 | || |||| || ||||| || ||||| ||| | || || |||| ||||| || |||| Sbjct 28153 TACCCATTATAATTGGCGGATTTGGAAACTGACTAGTGCCCCTAATAATTGGAGCACCTG 28212 Query 7670 ATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 |||| || ||||| | | ||||| ||||||||||| |||| || |||||||| Sbjct 28213 ATATAGCCTTTCCCCGTATAAACAACATAAGTTTTTGGCTACTCCCTCCTTCCTT 28267 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/103 (79%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||| ||||| ||||| |||||||||||||| ||||| || || ||||| | Sbjct 28588 ATATTTCGGGATGTCCAAAGAATCAAAATAAATGTTGATATAGGATTGGGTCTCCTCCTC 28529 Query 370728 CTGATGGATCAAAAAAGCTAGTA-TTAAAATTTCTATCAGTTA 370769 ||| || ||||| || | ||| || | ||||| ||| |||| Sbjct 28528 CTGCAGGGTCAAAGAAAGTTGTATTTTAGATTTCGATCGGTTA 28486 >seq378590 Length=46420 Score = 91.5 bits (100), Expect = 3e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||||| ||| || || || | || ||| ||| ||||||| |||||| ||||||| Sbjct 28377 CACTTCAATGCCTGGCTCCTTATTCTGGATGTTCTATGGGAGAATGTTTTAGGGATAATG 28436 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAA 5114 | ||||| ||||| |||||||||||||| ||| |||| Sbjct 28437 GCAAACACGCTTTGATCATCTACGATGAGTTATCTAAA 28474 >seq309868 Length=10903 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||| || || ||||| || || || ||||| || || || |||||||| |||||||| Sbjct 1547 AATACCTGTCCGTCAGTGATGGAAATGACATTCGTTGGAATGTAAGCAGACACATCACCA 1606 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 ||||||||||| | || ||||| || || | || |||||||||||| Sbjct 1607 GCTTGTGTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCACCAAAA 1654 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || || | || ||| ||| |||||||| ||||| ||||||| Sbjct 1983 CACTTCAGTACCTGGCTCCTTATTCTGGATGTTCTATGGGAGAATACTTTAGGGATAATG 1924 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122 | ||||||||||| ||||| || || || ||| ||||| |||| Sbjct 1923 GCAAACATGCTTTGATCATTTATGACGACTTATCCAAACAGGTCAA 1878 >seq411253 Length=43008 Score = 86.0 bits (94), Expect = 1e-11 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | |||||||| | | || |||||||| ||||| || |||||||| || || Sbjct 30699 CCAAATCTACAACGTGGTACTGACAGCGCATGCGTTTGTAATATTTTTCTTTAGAGTCAT 30758 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||| | || | | ||| |||||||||| | || ||| |||||| | || | || Sbjct 30759 GCCCATCATACTTCGTGGTGTCGGAAATTGGCTGGTGCCTCCAATGATCAGAGCATCAGA 30818 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||||||||| | | | || || || ||||||||| |||| || ||||| || || Sbjct 30819 TATGGCTTTCCTCTGTGTAAATAACATGAGTTTTTGACTACTCCCTCCTTCTTTCTT 30875 >seq366847 Length=8421 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/190 (70%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| ||||| |||| |||| || | | |||||| |||||| Sbjct 1835 AGCACCAAGTGTAGGGTGGACTCTTTCTGGATGTTGTTGTCTG--AGAGTTCTACCATCT 1778 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||| || || || || || | || ||||| ||| | ||||| ||||||||| Sbjct 1777 TCCCACTGTTTGCCCATAAAAATCAGATGCTGCTGGTCAGGCAGGATACCCTCCTTGTCT 1718 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| ||| | |||| ||| ||| ||||| || | ||| | ||| Sbjct 1717 TGGATTTTGGCCTTGACATTCTTTATGGAGTCACTGGTCTCCACCTCAAGGGTGGTGGTC 1658 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 1657 TTGCCTGTCA 1648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186091828162136