Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq397970 320 1e-82
seq397969 161 8e-35
seq273439 158 1e-33
seq408533 98.7 8e-16
seq383823 82.4 6e-11
seq344518 82.4 6e-11
>seq397970
Length=5258
Score = 320 bits (354), Expect = 1e-82
Identities = 528/770 (69%), Gaps = 5/770 (1%)
Strand=Plus/Minus
Query 29528 GGGTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCC 29587
|||||||| | |||||| || | || || || ||||| ||||| || | ||||
Sbjct 2364 GGGTGAGGATTGTAGCCTTCAATCTGAAAGTCTTCAGCCTTGAAGTCATCAATTTTCTCA 2305
Query 29588 ACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTC 29647
|| | | || || || |||| || || || || || | || |||||||| ||
Sbjct 2304 ACTTTTCGAAGGATTCTGAGCTTGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTC 2245
Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707
||| | || | ||| | ||||| | ||| |||||||||| ||||| ||||| || ||
Sbjct 2244 AGCAGCTCAATGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCT 2185
Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767
|| | || || |||| ||| || |||||||| | || | |||||||||||||||
Sbjct 2184 GGCTTCAGGCCCGTGATGTGTGCGATCATGTA-----GCAGGGCGTAGCTGGCGATGTTG 2130
Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827
|||||||| || || ||||| || |||||||||||||| |||||||| || ||||| |||
Sbjct 2129 AAGGGCACACCCAGGCCCATATCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCG 2070
Query 29828 TCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCT 29887
| |||||| ||||| || | ||| |||||||| || |||||||||||| | |||
Sbjct 2069 TTCACCACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCT 2010
Query 29888 TTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 29947
|| || ||||| ||||||| |||||| | ||||| || |||||| | |||| |||
Sbjct 2009 TTTGGATTCCAAGCACACAGGATGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCA 1950
Query 29948 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNN 30007
| |||||||| ||||| || || | || || ||||
Sbjct 1949 GTCACTTTTTGCAGTTGATCTACTCCTTGATCTGAATAATCTGAATCCATATCTTTGTAT 1890
Query 30008 NNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 30067
| |||||||||||||| || || || || || || | || || ||| | |||
Sbjct 1889 TCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTG 1830
Query 30068 TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACC 30127
||| ||| ||||||| ||||||| ||| || ||||| |||||||| || ||
Sbjct 1829 GTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACT 1770
Query 30128 CCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCC 30187
||||| || ||||| || | ||||||||| || ||| |||||||||| |||||||
Sbjct 1769 CCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCC 1710
Query 30188 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCG 30247
|| |||| || || || | ||||| || || || ||||| | | | |||| |
Sbjct 1709 GAAACACCCTTGCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTG 1650
Query 30248 TACCTCGCCTGAGACCCAAACATGGACAAGACTCCCGTGCCTGTCCTGTC 30297
|| | |||||| || |||| |||| | || ||||| || | |||
Sbjct 1649 TAGCGCGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGCGGTC 1600
>seq397969
Length=7843
Score = 161 bits (178), Expect = 8e-35
Identities = 134/164 (82%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||||
Sbjct 7712 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 7653
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| || || |||||||| |||||||||||| | |||||||| || ||||| |||| |
Sbjct 7652 ACACCCAGGCCCATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCACC 7593
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877
||||| ||||| || | ||| |||||||| || |||||||||||
Sbjct 7592 ACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAG 7549
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
|||||||||||||| || || || || || || | || || ||| | ||| |||
Sbjct 4431 AAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAAT 4372
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
||| ||||||| ||||||| ||| || ||||| |||||||| || || |||||
Sbjct 4371 CCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 4312
Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162
|| ||||| || | ||||||||| ||
Sbjct 4311 GACAGCTCCTTAGCGTTTGTGGATCC 4286
>seq273439
Length=4507
Score = 158 bits (174), Expect = 1e-33
Identities = 375/570 (66%), Gaps = 15/570 (3%)
Strand=Plus/Minus
Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669
||||||||| || || || | || ||||| || ||||| | || | ||| || ||||
Sbjct 2455 TGGGAAAGGC-CTTGGTTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 2397
Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729
| | ||| |||||||||| ||||| ||| | || || || | || || |||| ||| |
Sbjct 2396 AAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTG 2337
Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789
| |||||||| ||||| || | |||||||||| ||| |||| ||| || || ||| |||
Sbjct 2336 CGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCTGT 2277
Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 29849
| |||||||||||||| |||| ||| || ||||| || |||||| || || || |
Sbjct 2276 CTCCTGACCTCTGGTACAGCT-GCAGGACAGCTCATGGTTCACCACGTAGAAGTGGCAAA 2218
Query 29850 TGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGA 29909
||| |||| || |||||| | ||||| | ||||| ||||| | |
Sbjct 2217 GGGC--GGCA---------GGGTATGAGAGGAAGATCTTT-TGATTCCAAGCACATAGAA 2170
Query 29910 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 29969
|||| | |||||||| || ||| | |||| ||| | | |||||||| || || |
Sbjct 2169 TGATTCTTCTGTCTTCAGGTTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTCTA 2110
Query 29970 CCCCCATCCCCGAGTA-GTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCAC 30028
| || | || || | | | ||| |||||||
Sbjct 2109 CTCCTTGACGTGAATACATTTAAATCCACATCTTTGTATTCAGCCACCAAAGACCTCCAC 2050
Query 30029 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30088
|| || | | || || || | || || ||||| ||| || || |||||
Sbjct 2049 TGAAAGCTATGAACTGGGCCTAAATCCCCTTCTTCTCTGGTGGAGAGTACCAGGCTGTCC 1990
Query 30089 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 30148
|| ||||||| ||| |||| ||| |||||||| || || ||||| || ||||| ||
Sbjct 1989 AAGAAGTCTCGGGACCCGTGGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTA 1930
Query 30149 GAGTTTGTGGACCCTCTGACGAACCACAGC 30178
| |||||||| || ||| |||||||||
Sbjct 1929 GCATTTGTGGAGCCCTTGATCAACCACAGC 1900
>seq408533
Length=33819
Score = 98.7 bits (108), Expect = 8e-16
Identities = 115/153 (75%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321
||||||||| || || || || || || || ||||| |||| || | ||||| |
Sbjct 27117 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 27176
Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381
| || || |||||| || || ||||||||||| ||||| |||||||| ||||||| ||
Sbjct 27177 TAAAGATCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 27236
Query 114382 CTGCTTACC-TCTGTCGGAAGACGTAGCGGTCA 114413
||| ||||| |||| | ||||| || | |||||
Sbjct 27237 CTGTTTACCTTCTG-CTGAAGAAGTTGTGGTCA 27268
>seq383823
Length=18616
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| || || || ||||| |||| || | ||||| | | ||||| |||||| || ||
Sbjct 9583 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 9524
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| || || |||||||| ||||||| ||||| ||||||
Sbjct 9523 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCT 9476
>seq344518
Length=1300
Score = 82.4 bits (90), Expect = 6e-11
Identities = 113/155 (73%), Gaps = 6/155 (4%)
Strand=Plus/Plus
Query 114264 GAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCA 114323
||||||| || || || || || || || |||| |||| || | ||||| || |
Sbjct 823 GAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTAATGAGAACTATATTAATTCTGTCCCTTA 882
Query 114324 GAGGTCTATTCTTTTCGGGGATG----GAGAACCAAGTCTTTCTACCCATTATCACCACG 114379
||||| |||||| || || ||| |||||||| || || |||||||| |||||||
Sbjct 883 AAGGTCGATTCTTCTCTGGAATGAATGGAGAACCAGGTTTTCCTACCCATAATCACCAAA 942
Query 114380 TTCTGCTTACC-TCTGTCGGAAGACGTAGCGGTCA 114413
||||| ||||| |||| | ||||| || | |||||
Sbjct 943 TTCTGTTTACCTTCTG-CTGAAGAGGTTGTGGTCA 976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404077004155384
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |