Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq397970 320 1e-82 seq397969 161 8e-35 seq273439 158 1e-33 seq408533 98.7 8e-16 seq383823 82.4 6e-11 seq344518 82.4 6e-11 >seq397970 Length=5258 Score = 320 bits (354), Expect = 1e-82 Identities = 528/770 (69%), Gaps = 5/770 (1%) Strand=Plus/Minus Query 29528 GGGTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCC 29587 |||||||| | |||||| || | || || || ||||| ||||| || | |||| Sbjct 2364 GGGTGAGGATTGTAGCCTTCAATCTGAAAGTCTTCAGCCTTGAAGTCATCAATTTTCTCA 2305 Query 29588 ACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTC 29647 || | | || || || |||| || || || || || | || |||||||| || Sbjct 2304 ACTTTTCGAAGGATTCTGAGCTTGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTC 2245 Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||| | || | ||| | ||||| | ||| |||||||||| ||||| ||||| || || Sbjct 2244 AGCAGCTCAATGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCT 2185 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 || | || || |||| ||| || |||||||| | || | ||||||||||||||| Sbjct 2184 GGCTTCAGGCCCGTGATGTGTGCGATCATGTA-----GCAGGGCGTAGCTGGCGATGTTG 2130 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 |||||||| || || ||||| || |||||||||||||| |||||||| || ||||| ||| Sbjct 2129 AAGGGCACACCCAGGCCCATATCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCG 2070 Query 29828 TCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCT 29887 | |||||| ||||| || | ||| |||||||| || |||||||||||| | ||| Sbjct 2069 TTCACCACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCT 2010 Query 29888 TTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 29947 || || ||||| ||||||| |||||| | ||||| || |||||| | |||| ||| Sbjct 2009 TTTGGATTCCAAGCACACAGGATGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCA 1950 Query 29948 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNN 30007 | |||||||| ||||| || || | || || |||| Sbjct 1949 GTCACTTTTTGCAGTTGATCTACTCCTTGATCTGAATAATCTGAATCCATATCTTTGTAT 1890 Query 30008 NNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 30067 | |||||||||||||| || || || || || || | || || ||| | ||| Sbjct 1889 TCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTG 1830 Query 30068 TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACC 30127 ||| ||| ||||||| ||||||| ||| || ||||| |||||||| || || Sbjct 1829 GTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACT 1770 Query 30128 CCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCC 30187 ||||| || ||||| || | ||||||||| || ||| |||||||||| ||||||| Sbjct 1769 CCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCC 1710 Query 30188 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCG 30247 || |||| || || || | ||||| || || || ||||| | | | |||| | Sbjct 1709 GAAACACCCTTGCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTG 1650 Query 30248 TACCTCGCCTGAGACCCAAACATGGACAAGACTCCCGTGCCTGTCCTGTC 30297 || | |||||| || |||| |||| | || ||||| || | ||| Sbjct 1649 TAGCGCGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGCGGTC 1600 >seq397969 Length=7843 Score = 161 bits (178), Expect = 8e-35 Identities = 134/164 (82%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||| Sbjct 7712 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 7653 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| |||||||||||| | |||||||| || ||||| |||| | Sbjct 7652 ACACCCAGGCCCATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCACC 7593 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||| ||||| || | ||| |||||||| || ||||||||||| Sbjct 7592 ACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAG 7549 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 |||||||||||||| || || || || || || | || || ||| | ||| ||| Sbjct 4431 AAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAAT 4372 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||| ||||||| ||| || ||||| |||||||| || || ||||| Sbjct 4371 CCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 4312 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || ||||| || | ||||||||| || Sbjct 4311 GACAGCTCCTTAGCGTTTGTGGATCC 4286 >seq273439 Length=4507 Score = 158 bits (174), Expect = 1e-33 Identities = 375/570 (66%), Gaps = 15/570 (3%) Strand=Plus/Minus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 ||||||||| || || || | || ||||| || ||||| | || | ||| || |||| Sbjct 2455 TGGGAAAGGC-CTTGGTTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 2397 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | | ||| |||||||||| ||||| ||| | || || || | || || |||| ||| | Sbjct 2396 AAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTG 2337 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 | |||||||| ||||| || | |||||||||| ||| |||| ||| || || ||| ||| Sbjct 2336 CGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCTGT 2277 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 29849 | |||||||||||||| |||| ||| || ||||| || |||||| || || || | Sbjct 2276 CTCCTGACCTCTGGTACAGCT-GCAGGACAGCTCATGGTTCACCACGTAGAAGTGGCAAA 2218 Query 29850 TGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGA 29909 ||| |||| || |||||| | ||||| | ||||| ||||| | | Sbjct 2217 GGGC--GGCA---------GGGTATGAGAGGAAGATCTTT-TGATTCCAAGCACATAGAA 2170 Query 29910 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 29969 |||| | |||||||| || ||| | |||| ||| | | |||||||| || || | Sbjct 2169 TGATTCTTCTGTCTTCAGGTTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTCTA 2110 Query 29970 CCCCCATCCCCGAGTA-GTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCAC 30028 | || | || || | | | ||| ||||||| Sbjct 2109 CTCCTTGACGTGAATACATTTAAATCCACATCTTTGTATTCAGCCACCAAAGACCTCCAC 2050 Query 30029 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30088 || || | | || || || | || || ||||| ||| || || ||||| Sbjct 2049 TGAAAGCTATGAACTGGGCCTAAATCCCCTTCTTCTCTGGTGGAGAGTACCAGGCTGTCC 1990 Query 30089 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 30148 || ||||||| ||| |||| ||| |||||||| || || ||||| || ||||| || Sbjct 1989 AAGAAGTCTCGGGACCCGTGGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTA 1930 Query 30149 GAGTTTGTGGACCCTCTGACGAACCACAGC 30178 | |||||||| || ||| ||||||||| Sbjct 1929 GCATTTGTGGAGCCCTTGATCAACCACAGC 1900 >seq408533 Length=33819 Score = 98.7 bits (108), Expect = 8e-16 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || || ||||| |||| || | ||||| | Sbjct 27117 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 27176 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | || || |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 27177 TAAAGATCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 27236 Query 114382 CTGCTTACC-TCTGTCGGAAGACGTAGCGGTCA 114413 ||| ||||| |||| | ||||| || | ||||| Sbjct 27237 CTGTTTACCTTCTG-CTGAAGAAGTTGTGGTCA 27268 >seq383823 Length=18616 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 9583 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 9524 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || || |||||||| ||||||| ||||| |||||| Sbjct 9523 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCT 9476 >seq344518 Length=1300 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/155 (73%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 114264 GAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCA 114323 ||||||| || || || || || || || |||| |||| || | ||||| || | Sbjct 823 GAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTAATGAGAACTATATTAATTCTGTCCCTTA 882 Query 114324 GAGGTCTATTCTTTTCGGGGATG----GAGAACCAAGTCTTTCTACCCATTATCACCACG 114379 ||||| |||||| || || ||| |||||||| || || |||||||| ||||||| Sbjct 883 AAGGTCGATTCTTCTCTGGAATGAATGGAGAACCAGGTTTTCCTACCCATAATCACCAAA 942 Query 114380 TTCTGCTTACC-TCTGTCGGAAGACGTAGCGGTCA 114413 ||||| ||||| |||| | ||||| || | ||||| Sbjct 943 TTCTGTTTACCTTCTG-CTGAAGAGGTTGTGGTCA 976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404077004155384