Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq366024 340 2e-88 seq404197 266 3e-66 seq265909 123 2e-23 seq338581 120 3e-22 seq418289 116 3e-21 seq354280 100 2e-16 seq26090 100 2e-16 seq400361 98.7 8e-16 >seq366024 Length=42324 Score = 340 bits (376), Expect = 2e-88 Identities = 608/880 (69%), Gaps = 16/880 (2%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || ||| ||||| ||| || |||| ||||| || ||||| | |||||||| ||| Sbjct 18341 TGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCC 18282 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTT-TCACACTTTAGAGCTACA--AGC 4376 ||||| ||||| ||||| | | || || || | | || |||| | | Sbjct 18281 ATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCC---AGCTCCCGCATA 18225 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | || ||| || || ||||| || ||||| |||| | ||| || || ||||| | Sbjct 18224 AGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGC 18165 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496 |||| || || || | || | ||||| |||||||| | || || | |||||| Sbjct 18164 TTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACTGCATTGACGATTATT 18105 Query 4497 TCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAA 4556 | ||| | | | | | || ||||| | || | || | || | | || ||||| Sbjct 18104 TATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAATATCAGGCAGGCAAAG 18045 Query 4557 TCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATT 4616 ||||| || ||||| |||||||||||||| ||||| || ||||| || | ||||| || Sbjct 18044 TCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGTATC 17985 Query 4617 AAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCT 4676 | ||||| ||||| ||||| ||||| | ||||| || ||||||||||| || ||||| Sbjct 17984 AGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCC 17925 Query 4677 ACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTT 4735 || || ||||| ||||| || || || ||| ||| ||||||| ||||| Sbjct 17924 ACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCT-CTTTGTCCCCGATCCAGCA 17866 Query 4736 TAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---A 4792 || ||||| | || || ||||| || || || ||||| | |||||||| || | | Sbjct 17865 CAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAA 17806 Query 4793 TTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAG 4851 || |||| || ||| |||| ||| |||||||| || || || ||||||||||||| Sbjct 17805 TTCCCTTTCTT----TGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAG 17750 Query 4852 AATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAA 4911 |||| || ||||| || ||||| | || || || || || | ||||| || | |||| Sbjct 17749 AATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAA 17690 Query 4912 CTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAA 4971 |||| | | ||| || || |||||||| |||||||| || ||||| |||||||| | Sbjct 17689 CTTCTTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGA 17630 Query 4972 ACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031 | |||| || ||| || || || || || |||||||| || || |||||| | | Sbjct 17629 AAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAA 17570 Query 5032 AATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACA 5091 || || | | || || |||||| | |||||||| || || || ||||| || |||| Sbjct 17569 TGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACA 17510 Query 5092 TAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 | |||||||||| | || | || |||| |||||||| Sbjct 17509 TCTGCCAAATATCATGGTATTTGATAGGAAAGATGACAAA 17470 >seq404197 Length=65104 Score = 266 bits (294), Expect = 3e-66 Identities = 576/854 (67%), Gaps = 16/854 (2%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || ||| ||||| ||| || ||||| ||||| || ||||| | ||| |||| ||| Sbjct 53064 TGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAACTATTCTCC 53005 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTT-TCACACTTTAGAGCTACA--AGC 4376 ||||| ||||| ||||| | | || || || | | || |||| || | Sbjct 53004 ATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCC---AGCTCCAGCATA 52948 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | || ||| || | |||| || ||||| |||| | |||| || || ||||| | Sbjct 52947 AGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCAATTCATCCCAATGAGC 52888 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496 |||| | | || | || | ||||| |||||||| | || || | ||| || Sbjct 52887 TTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACGATAATT 52828 Query 4497 TCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAA 4556 ||||| | | | | | || ||||| | || | || | |||| | | ||||| Sbjct 52827 TCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGAAGGCAAAG 52768 Query 4557 TCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATT 4616 ||||| || ||||| |||||||||||||| ||||| || ||||| || | |||||||| Sbjct 52767 TCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATC 52708 Query 4617 AAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCT 4676 | |||| || || ||||| ||||| | ||||| || ||||||||||| || ||||| Sbjct 52707 AGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCC 52648 Query 4677 ACGGCGGCAAACGCTACTAATCGGGACCCG-AACGAGCTGGCTTTGTCTTTAATCCATTT 4735 || |||||||| ||||| | || | | | | ||| ||||||| | ||||| Sbjct 52647 ACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGC-CTCTTTGTCCTCGATCCAGCG 52589 Query 4736 TAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAA 4792 || ||||| | || || ||||| || || || ||||| | || ||||| || || Sbjct 52588 CAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAA 52529 Query 4793 TTTACTTTTTTCAAATGG-GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAG 4851 || |||| || ||| |||||||| |||||||| || || || ||||||||||| | Sbjct 52528 TTCCCTTTCTT----TGGAATCTTGAATGTAAGTGTCAATGAGGAGACTATACATTTCCG 52473 Query 4852 AATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAA 4911 ||||||| ||||| || || || || || || || || | ||||| || | |||| Sbjct 52472 AATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAA 52413 Query 4912 CTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAA 4971 |||| | | || | || || | |||||| ||||||| |||||||| |||||| | | Sbjct 52412 CTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCGTCACTTGCTGCAGAGA 52353 Query 4972 ACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031 | | || ||||| || | || || || |||||||| || || || ||| | | Sbjct 52352 AAGGCAGGACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCGGTGCTGAA 52293 Query 5032 AATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACA 5091 || || | | || || || ||| | ||||| || || || || || || || ||| Sbjct 52292 TGTCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAGAAGGAAGCCTCAGCGTTCTTACACA 52233 Query 5092 TAGACCAAATATCA 5105 | |||||||||| Sbjct 52232 TCTGCCAAATATCA 52219 >seq265909 Length=7629 Score = 123 bits (136), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||||| || || | ||||| |||||||| || || |||| Sbjct 2063 AGCCCTTGTGAAAACAGACATTCAGATAGCTCTTCCTTCTGGGTGCTATGGGAGAGTAGC 2122 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | ||||| ||||| | |||||||| || || || || || ||||| |||||| Sbjct 2123 TCCACGTTCTGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGA 2182 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| |||||||||| ||||| |||| ||||||||||||| |||||| | | || Sbjct 2183 AGATTATAGAGGAAGTGTTGGTGTTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTGAAG 2241 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 | ||||||| ||| | | || || || ||||| ||| Sbjct 2242 --TCAAAAAGGATGATCGAATTGCACAGCTCATTTGTGAA 2279 >seq338581 Length=33270 Score = 120 bits (132), Expect = 3e-22 Identities = 158/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834 |||||||| || || || || | ||||| |||||||| || || ||||| | | ||| Sbjct 30241 AAAACCGACATCCAGATAGCTCTTCCTTCTGGGTGCTATGGGAGAGTAGCTGCGCGTTCT 30182 Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894 || ||||| | |||||||| || || || || || ||||| |||||| ||| || ||| Sbjct 30181 GGTTTGGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGATTACAGA 30122 Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAAAAG 31951 ||||||||||| ||||| ||||||||| ||| |||||| | | || | |||||| Sbjct 30121 GGAAACGTTGGTATTGTACTGTTTAATTCTGGCAAAGAAAAGT-TTGAAG--TCAAAAAG 30065 Query 31952 GGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATA 31987 | ||| | | || || || ||||| ||| | ||| Sbjct 30064 TGTGATCGAATTGCACATCTCATTTGTGAACAGATA 30029 >seq418289 Length=29330 Score = 116 bits (128), Expect = 3e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| ||||| || ||||| || | |||||||| | ||||| ||||| Sbjct 26790 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 26731 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || |||||||| ||| Sbjct 26730 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 26671 Query 4692 AC 4693 || Sbjct 26670 AC 26669 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || ||||||||||||||||| || ||||| || ||| Sbjct 24795 TCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGCA 24736 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | ||||| || | |||||||| Sbjct 24735 ATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTC 24692 >seq354280 Length=34579 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || ||||| |||||||| ||| || | ||||| |||||||| || || ||||||| | Sbjct 8669 GTGAAAACTGATATTCAGATTCCTCTTCCTTCTGGGTGCTATGGGAGAGTAGCTCCATGT 8728 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||| | ||||| | ||||| || || || || | || ||||| |||||| ||| ||| Sbjct 8729 TCTAGCTTGGCTGCAAAACATTTCATAGATGTAGAAGCTGGTGTCATAGATGAAGATTAT 8788 Query 31892 AGAGGAAACGTTGGAATTGT 31911 |||||||| ||||| |||| Sbjct 8789 AGAGGAAATGTTGGTGTTGT 8808 >seq26090 Length=5153 Score = 100 bits (110), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 31769 CTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCT 31828 || || |||||| | ||||| | || | ||||| ||||||||| | || ||||||| Sbjct 5050 CTTGTGAAAACCAACATTCACACAGCTCTTCCTTCTGGGTGCTACAGGAGAGTAGCTCCA 4991 Query 31829 AGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGAC 31888 ||||| ||||| | ||| || | || || || || || ||||| | |||| ||| Sbjct 4990 CATTCTGGTTTGGCTGCAAAATACCTCATAGATGTAGGAGCTGGTGTCACAGATGAAGAT 4931 Query 31889 TATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAGTATAAAA 31948 ||||||||||| ||||| || | |||||||||||| | ||| || | || | ||| Sbjct 4930 TATAGAGGAAATGTTGGTGTTCTACTGTTTAATTTTG--GCAAAGTC-TGAAG--TCAAA 4876 Query 31949 AAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 ||||| ||| | | || || || ||||| ||| Sbjct 4875 AAGGGTGATGGAATTGCACAGCTCATTTGTGAA 4843 >seq400361 Length=55729 Score = 98.7 bits (108), Expect = 8e-16 Identities = 100/130 (77%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| || || || |||||||||||||||||||| || || | Sbjct 42759 AAAATCTT---ACCAAATTTTCATTCACAATTCCGTCACTGGCTGCAAAAAAGGCTAAGA 42815 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| || || | ||||| || |||||||| || | ||| || | Sbjct 42816 TGTGAGAGATAAAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 42875 Query 5041 TTAAATCAAC 5050 ||||||||| Sbjct 42876 ATAAATCAAC 42885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424856124320852