Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq397970 322 4e-83 seq273439 174 1e-38 seq397969 140 2e-28 >seq397970 Length=5258 Score = 322 bits (356), Expect = 4e-83 Identities = 484/688 (70%), Gaps = 5/688 (1%) Strand=Plus/Minus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 |||| || || || || || | || |||||| | |||||| | || | ||||| ||||| Sbjct 2282 TGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTCAGCAGCTCAATGTGATTCAGGT 2223 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | ||| || ||||||| ||||| ||||| || || || | || || |||| ||| | Sbjct 2222 AAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGTG 2163 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | |||||||| | || | ||||||||||||||| ||||| || || || ||||| | Sbjct 2162 CGATCATGTA-----GCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATAT 2108 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATA 27343 | || ||||||||||| ||||| || || ||||| || | ||||| ||||| || | Sbjct 2107 CTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAA 2048 Query 27344 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 27403 |||||||||||| || || |||||||| | ||||| || ||||| || |||| || Sbjct 2047 GGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGA 1988 Query 27404 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 27463 |||| | ||||| || |||||| | |||| ||| | |||||||| ||||| | Sbjct 1987 TGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCTA 1928 Query 27464 CCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATT 27523 | || | || || ||| ||| || |||| || || || ||||||||||| | Sbjct 1927 CTCCTTGATCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACT 1868 Query 27524 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 27583 | || || || || || || | || || ||| | ||| ||| ||| |||||| Sbjct 1867 GAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCA 1808 Query 27584 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGG 27643 | ||||||| ||| || ||||| |||||||| || || ||||| || ||||| || | Sbjct 1807 AGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAG 1748 Query 27644 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 27703 ||||||||| || ||| |||||||||| ||||||| || |||| || || || | Sbjct 1747 CGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAACAC 1688 Query 27704 TCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACA 27763 ||||| || || || ||||| | | | |||| ||| | ||||| || |||| Sbjct 1687 GTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACA 1628 Query 27764 CGGACAAGACTCCCGTGCCCGTCCTGTC 27791 | |||| | || |||||||| | ||| Sbjct 1627 CCGACAGGGTGCCGGTGCCCGTGCGGTC 1600 >seq273439 Length=4507 Score = 174 bits (192), Expect = 1e-38 Identities = 389/572 (68%), Gaps = 19/572 (3%) Strand=Plus/Minus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 ||||||||| || || || | || ||||| | |||||| | || | ||||||||||| Sbjct 2455 TGGGAAAGGC-CTTGGTTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 2397 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | ||| || ||||||| ||||| ||| | || || || | || || |||| ||| | Sbjct 2396 AAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTG 2337 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | |||||||| ||||| || | |||||||||| ||| |||| || || || ||| ||| Sbjct 2336 CGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCTGT 2277 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC-TCCATCGCTTACGTAAAACTGACAT 27342 | || ||||||||||| ||||| || || ||||| | || | ||||| || || || Sbjct 2276 CTCCTGACCTCTGGTACAGCTG-CAGGACAGCTCATGGTTCAC-CACGTAGAAGTGGCAA 2219 Query 27343 ATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACAC 27401 | ||| |||| | | | || |||| ||| ||||| | ||||| || || | Sbjct 2218 AGGGC--GGCA--GGGTATGA-----GAGG---AAGATCTTT-TGATTCCAAGCACATAG 2172 Query 27402 GATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATC 27461 ||||| | |||||||| || ||| | |||| ||| | | |||||||| || || Sbjct 2171 AATGATTCTTCTGTCTTCAGGTTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTC 2112 Query 27462 CACCCCCATCCCCGAGTA-GTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 27520 || || | || || | || || || |||| || || | ||| ||||| Sbjct 2111 TACTCCTTGACGTGAATACATTTAAATCCACATCTTTGTATTCAGCCACCAAAGACCTCC 2052 Query 27521 ATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 27580 | || || | | || || || | || || ||||| ||| || || ||| Sbjct 2051 ACTGAAAGCTATGAACTGGGCCTAAATCCCCTTCTTCTCTGGTGGAGAGTACCAGGCTGT 1992 Query 27581 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 27640 |||| ||||||| ||| |||| ||| |||||||| || || ||||| || ||||| | Sbjct 1991 CCAAGAAGTCTCGGGACCCGTGGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCT 1932 Query 27641 TGGAGTTTGTGGACCCTCTGACGAACCACAGC 27672 | | |||||||| || ||| ||||||||| Sbjct 1931 TAGCATTTGTGGAGCCCTTGATCAACCACAGC 1900 >seq397969 Length=7843 Score = 140 bits (154), Expect = 2e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 7712 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 7653 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || ||||||||| | ||||| || || ||||| || | Sbjct 7652 ACACCCAGGCCCATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCACC 7593 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 ||||| ||||| || | |||||||||||| || || ||||||||| Sbjct 7592 ACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAGG 7548 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| || || || ||||||||||| || || || || || || || | || Sbjct 4453 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 4394 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| || Sbjct 4393 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 4334 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||| || || ||||| || ||||| || | ||||||||| || Sbjct 4333 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 4286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 367609282155164