Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq418776 127 5e-24 seq411564 123 6e-23 seq359707 116 8e-21 seq258579 111 4e-19 seq364176 105 2e-17 seq393589 100 7e-16 seq336898 95.1 3e-14 seq331670 93.3 1e-13 seq414080 89.7 1e-12 seq168090 87.8 4e-12 >seq418776 Length=96061 Score = 127 bits (140), Expect = 5e-24 Identities = 163/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| || || | || |||||||| |||||||||||||| | | ||| Sbjct 55100 CCTCAGACGGAGGACCAGGTGCAATGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGT 55041 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| || || |||||||||||||||| ||| | | ||| || Sbjct 55040 GCAGCCATCTTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTAGTCAGGGGGGATGCC 54981 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC--TGAACTCTCTACTTCA 152060 |||||| || || || || || ||| |||| | | |||| || |||| || || Sbjct 54980 TTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGACTCC--ACCTCC 54923 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||| | || ||||||||||||| |||||| Sbjct 54922 AGGGTGATGGTCTTGCNNNTCAGGGTCTTCACGAAGATCTGCAT 54879 >seq411564 Length=61085 Score = 123 bits (136), Expect = 6e-23 Identities = 165/227 (73%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| || || || ||||||||||| |||||||||||||| | | ||| Sbjct 40448 CCTTAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGT 40507 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTC--CGCCGAGATT 152000 | || ||||| || ||| || || ||||| |||||||||||||| | | ||| Sbjct 40508 GCGGCCGTCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGGGATG 40567 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACT 152057 |||||||| || || || || || ||| ||| | | |||| ||| ||| || Sbjct 40568 CCTTCCTTATCCTGGATCTTGGCCTTCACATTCTTGATGGTGTC---ACTGGGCTCCACC 40624 Query 152058 TCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || |||||||| || |||||| |||||| |||||| Sbjct 40625 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 40671 >seq359707 Length=5412 Score = 116 bits (128), Expect = 8e-21 Identities = 163/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| || || || ||||||||||| |||||| ||||||| | ||| Sbjct 2571 CCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGCTGTAATCAGAAGGAGT 2630 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 |||||||| || ||| || || ||||| |||||||||||||| | | ||| || Sbjct 2631 GTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCC 2690 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCA 152060 ||| || || || || || || || ||| | | ||| ||| | ||| || || Sbjct 2691 TTCTTTATCCTGGATCTTGGCCTTCACGTTCTTGATGGTGTCACTGGA--CTCCACCTCC 2748 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || ||||| || | ||||||||||||| ||||||||| Sbjct 2749 AGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTT 2795 >seq258579 Length=20613 Score = 111 bits (122), Expect = 4e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | ||||||||||||| ||||| ||||| | |||||| || | ||| | | Sbjct 19186 AGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATACGT 19127 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| || || |||||||| | | ||||||||| Sbjct 19126 CCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 19067 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | |||| || || || || |||||||| Sbjct 19066 TTGTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTCAAGAGTG 19007 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| || ||||||||||| | |||||| || Sbjct 19006 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 18966 >seq364176 Length=18321 Score = 105 bits (116), Expect = 2e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | |||||||||||||| ||||| ||||| |||||| || | ||||| | Sbjct 5348 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTGGTCAGACAAAGTACGT 5407 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| || || |||||||| | | ||||||||| Sbjct 5408 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 5467 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | ||| | || | || || || ||||| Sbjct 5468 TTATCCTGGATCTTGGCGTTTACATTTTCTGTTGTATCCAAGGGTTCGACCTCGAGAGTG 5527 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| || ||||||||||| | |||||| || Sbjct 5528 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 5568 >seq393589 Length=19132 Score = 100 bits (110), Expect = 7e-16 Identities = 153/217 (71%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | ||||||||||||| ||||| ||||| |||||||| || | ||||| | Sbjct 8061 AGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 8002 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| || || |||||||| | || ||||||||| Sbjct 8001 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAAATTCCTTCC 7942 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | |||| | || | || || | ||||| Sbjct 7941 TTGTCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTTGAGAGTG 7882 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103 || || || || || || ||||||| ||| | ||||| Sbjct 7881 ATGGTCTT-CCTGTCAGGGTCTTCATGAAAATCTGCA 7846 >seq336898 Length=33758 Score = 95.1 bits (104), Expect = 3e-14 Identities = 155/222 (70%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | |||||||||||||||||||| ||||| |||||||| || | ||||| | Sbjct 29866 AGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 29807 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| || | |||||||| | | ||||||||| Sbjct 29806 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTGTTTGCTGGTCAGGAGGAATTCCTTCC 29747 Query 152007 TTTTCTTGAATTTTTTGTTTGACA-GTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || || || | || || ||| | |||| | || || || || || ||||| Sbjct 29746 TTGTCCTGGCTCTTGGCCTTTACATTTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGT 29687 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || | | || || || ||||||| ||| | |||||| || Sbjct 29686 GATGGCCATCCCTGTCAGGGTCTTCAAGAAAATCTGCATATT 29645 >seq331670 Length=23129 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/210 (70%), Gaps = 12/210 (6%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || |||||||| |||||||||||||| | | ||| | |||||||| | ||| || Sbjct 21986 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCATCTGTTTGCCT 22045 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT---TTGT 152024 || |||| |||||||||||||| || | ||| ||||| || || || || || | Sbjct 22046 GCAAAGAGGAGCCTCTGCTGGTCAGCGGGGATGCCTTCTTTATCCTGGATCTTGGCATCC 22105 Query 152025 TTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||| ||| || |||| ||| ||| || || || || || || |||| || Sbjct 22106 AGGACATTCT---CGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTCTTGCAGGTC 22159 Query 152082 AGAGTCTTCACGAAGACCTGCATTTTACCC 152111 || ||||||| ||||| |||||| | |||| Sbjct 22160 AGGGTCTTCATGAAGATCTGCATATCACCC 22189 >seq414080 Length=5684 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958 ||||||||||| ||||| ||||| |||||||| || ||||| | |||||||| || Sbjct 4725 AGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACATCCATCTTCCAGT 4670 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 || || || ||||| || || |||||||| | | ||||||||||| || || || Sbjct 4669 TGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATC 4610 Query 152019 TTTTGTTTGACA-GTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCC 152077 || || ||| | ||| | ||||| || ||||||||||| || || | || Sbjct 4609 TTGACCTTTACATTTTTCTGTTGTATCTGAGGGTTCAACTTCAAGAGTGATGGTCAT-CC 4551 Query 152078 CGTGAGAGTCTTCACGAAGACCTGCA 152103 | || ||||||| ||| | ||||| Sbjct 4550 CCAGAAGGTCTTCATGAAAATCTGCA 4525 >seq168090 Length=9538 Score = 87.8 bits (96), Expect = 4e-12 Identities = 151/217 (70%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || || || |||||||| |||||||||| ||| | | ||| |||||| Sbjct 8499 AGGACCTGGTGCAGGGTCGACTCTTTCTGGATGTTGTGATCAGAAAGAGTGTGGCCATCT 8558 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | ||| ||||||| || Sbjct 8559 TCCAGATGCTTGCCTGCAAAGATGAGCCTCTGCTGTTCGGGAG-GATGCCTTCCTCATCC 8617 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| || | | |||| ||| |||||| || || || || Sbjct 8618 TGGATCTTGGCCTTCACATTCCTGATGATGTC---ACTGGGCTCTACCTCCAGGGTGATG 8674 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTT 152106 || |||| || | ||||||||||||| ||||||| Sbjct 8675 GTCTTGCTGGTCAACGTCTTCACGAAGATTTGCATTT 8711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147590454692924