Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq366024 219 4e-52 seq404197 143 3e-29 seq400361 111 2e-19 seq418289 93.3 4e-14 seq387339 84.2 2e-11 >seq366024 Length=42324 Score = 219 bits (242), Expect = 4e-52 Identities = 399/584 (68%), Gaps = 0/584 (0%) Strand=Plus/Minus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||| ||||| |||| || || || || ||||| | |||||| |||||||| | Sbjct 18053 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 17994 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 || || || | ||||||||||| | ||| ||||| | ||||| || || |||||||| Sbjct 17993 CCGGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAG 17934 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAA 23688 || || || || || |||||||| || | |||| ||| | || || | | || Sbjct 17933 ATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCTTTGTCCCCG 17874 Query 23689 ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTT 23748 ||||| | ||||| |||||| |||||||| ||||| ||||| || || Sbjct 17873 ATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTG 17814 Query 23749 AAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATT 23808 |||||||| |||||| |||| | || || || ||||| || | |||||||||| Sbjct 17813 AAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATT 17754 Query 23809 TCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAAT 23868 |||||||| || ||||| || ||||| | || ||||| ||||| | ||||| | | Sbjct 17753 TCAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCTTCCGTAATC 17694 Query 23869 TGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCA 23928 ||||| || | ||| | | || ||||| || || || |||||||| || ||| Sbjct 17693 TGAACTTCTTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCA 17634 Query 23929 AAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCA 23988 |||||||| |||| || || |||| ||| || |||| | || ||| | Sbjct 17633 AAGAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGC 17574 Query 23989 TTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTA 24048 | ||| || || || | || || || ||| |||||||||| ||| || |||| Sbjct 17573 TGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTA 17514 Query 24049 TACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092 ||||| |||||||||||| | || || ||||| || || || Sbjct 17513 TACATCTGCCAAATATCATGGTATTTGATAGGAAAGATGACAAA 17470 >seq404197 Length=65104 Score = 143 bits (158), Expect = 3e-29 Identities = 235/339 (69%), Gaps = 0/339 (0%) Strand=Plus/Minus Query 23512 GCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCT 23571 ||||| ||||| |||| || || || || ||||| | |||||| |||||||| | || Sbjct 52773 GCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCG 52714 Query 23572 GGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATA 23631 ||||| | ||||| ||| || | ||| ||||| | ||||| || || |||||||| || Sbjct 52713 GGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATT 52654 Query 23632 CCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATC 23691 || || || || |||||||| || | ||| | | | | || | | || ||| Sbjct 52653 CCTTCCACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCTTTGTCCTCGATC 52594 Query 23692 CAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAG 23751 || | ||||| |||||| |||||||| ||||| ||||| || || ||| Sbjct 52593 CAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAG 52534 Query 23752 AGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCA 23811 ||||| |||||| |||| || || || ||||| || | |||||||||||| Sbjct 52533 AGAAATTCCCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAGACTATACATTTCC 52474 Query 23812 GAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAA 23850 ||||| || ||||| || || || || || ||||| ||| Sbjct 52473 GAATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAA 52435 >seq400361 Length=55729 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | |||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 38420 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 38479 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| ||||| |||||||| ||||| || |||||||| || || ||||| ||||||| Sbjct 38480 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 38539 Query 23651 CCAC 23654 |||| Sbjct 38540 CCAC 38543 >seq418289 Length=29330 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 || || || ||||| | |||||| |||||||| | || ||||| | ||||||||||| Sbjct 26790 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 26731 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||| | ||||| || || |||||||| || || || || || |||||||| Sbjct 26730 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 26671 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 26670 ACGACACGT 26662 >seq387339 Length=24907 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||| |||||| | ||||||||||||||||| |||||| ||||||||||||| | Sbjct 14183 CTCCTGGGCTCAAGCAGTCCTCCTGCCTCAGCCTCCTGAGTAGGTGGGATTACAGGCTCA 14124 Query 8465 AGCCACCACGCCAAGC 8480 |||||||| || ||| Sbjct 14123 GGCCACCACACCCAGC 14108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518740775141600