Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq258579 114 9e-21 seq359707 113 3e-20 seq411564 111 1e-19 seq418776 105 5e-18 seq364176 105 5e-18 seq393589 91.5 1e-13 seq168090 91.5 1e-13 >seq258579 Length=20613 Score = 114 bits (126), Expect = 9e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| | | ||||||||| | |||||| || | | || Sbjct 19186 AGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATACGT 19127 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || |||||||||| | ||||| || | ||| | |||||| Sbjct 19126 CCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 19067 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| | || | || ||| ||||| | || Sbjct 19066 TTGTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTCAAGAGTG 19007 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| |||||||||||||| || ||||| Sbjct 19006 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 18969 >seq359707 Length=5412 Score = 113 bits (124), Expect = 3e-20 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC- 44169 || || ||||| | | |||||||| || || ||| || |||||| ||||||| | Sbjct 2566 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGCTGTAATCAGAA 2625 Query 44170 -GAGT-TGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 |||| |||| | || |||||||| || || |||||||| | | |||||| || | Sbjct 2626 GGAGTGTGGC---CATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGG 2682 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCT-ATGGTGTCGGCGGATTC 44286 || | ||||| || ||| ||||| ||||| |||| | |||||||| ||| || Sbjct 2683 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTCAC-GTTCTTGATGGTGTCACTGGACTC 2741 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| || || | ||||||||||||||| ||||| Sbjct 2742 CACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2792 >seq411564 Length=61085 Score = 111 bits (122), Expect = 1e-19 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || || ||| || |||||||||||||| | | ||| |||| ||| Sbjct 40461 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCGGCCGTCTTCC 40520 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC--TGAAGGCACACCTTCCTTTTCCG 44246 ||||| || || |||||||| | | |||||| || | || | |||||||| ||| Sbjct 40521 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGGGATGCCTTCCTTATCCT 40580 Query 44247 TTATCTTCTGCTTCAATGTTCCT-ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| |||| | ||| | |||||||| || |||||||||| || || ||| Sbjct 40581 GGATCTTGGCCTTC-ACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 40639 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||||||| ||||||| ||||| Sbjct 40640 TTGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 40671 >seq418776 Length=96061 Score = 105 bits (116), Expect = 5e-18 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | |||||||| | || ||| || |||||||||||||| | Sbjct 55105 CCACCCCTCAGACGGAGGACCAGGTGCAATGTTGACTCTTTCTGGATGTTGTAATCAGAA 55046 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || |||||||| || || |||||||| | | ||||| || | || Sbjct 55045 AGAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTAGTCAGGGGGG 54986 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||||| | | |||||||| ||| |||||| Sbjct 54985 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGACTCCACC 54926 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| | | ||||||||||||||||| ||||| Sbjct 54925 TCCAGGGTGATGGTCTTGCNNNTCAGGGTCTTCACGAAGATCTGCAT 54879 >seq364176 Length=18321 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||||||||| |||||| || | | || Sbjct 5348 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTGGTCAGACAAAGTACGT 5407 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || |||||||||| | ||||| || | ||| | |||||| Sbjct 5408 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 5467 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| || | || || | || || || ||| ||||| | || Sbjct 5468 TTATCCTGGATCTTGGCGTTTACATTTTCTGTTGTATCCAAGGGTTCGACCTCGAGAGTG 5527 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| |||||||||||||| || ||||| Sbjct 5528 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 5565 >seq393589 Length=19132 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| | | ||||||||| |||||||| || | | || Sbjct 8061 AGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 8002 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || |||||||||| | ||||| || | | | |||||| Sbjct 8001 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAAATTCCTTCC 7942 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| || || || ||| |||| | || Sbjct 7941 TTGTCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTTGAGAGTG 7882 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCA 44336 || ||| |||| || |||||||||| ||| || |||| Sbjct 7881 ATGGTC-TTCCTGTCAGGGTCTTCATGAAAATCTGCA 7846 >seq168090 Length=9538 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/213 (71%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGT-TGGCGCTCGTCG 44185 ||| |||| || || ||| || |||||||||| ||| | |||| |||| | || Sbjct 8502 ACCTGGTGCAGGGTCGACTCTTTCTGGATGTTGTGATCAGAAAGAGTGTGGC---CATCT 8558 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 ||||| ||||| || |||||||| | | |||||| || | ||| | ||||||| ||| Sbjct 8559 TCCAGATGCTTGCCTGCAAAGATGAGCCTCTGCTGTTCGGGAGG-ATGCCTTCCTCATCC 8617 Query 44246 GTTATCTTCTGCTTCAATGTTCCT-ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||||| ||||| ||| |||| || || ||||||| || || || Sbjct 8618 TGGATCTTGGCCTTCACA-TTCCTGATGATGTCACTGGGCTCTACCTCCAGGGTGATGGT 8676 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| | || | |||||||||||||||||||| Sbjct 8677 CTTGCTGGTCAACGTCTTCACGAAGATTTGCAT 8709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358141363758948