Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq245831 221 2e-52 seq407932 165 1e-35 >seq245831 Length=393 Score = 221 bits (244), Expect = 2e-52 Identities = 237/311 (76%), Gaps = 2/311 (1%) Strand=Plus/Minus Query 9219 AATGTTGATGGTTTCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACT 9278 ||| || || ||||| || || | || || | | | ||||||||||| ||||| || Sbjct 381 AATCTTAATAGTTTCTCCTATCAGTATCAGCCTACTCGTCTGGAACAGCTGCTCATCGTC 322 Query 9279 CCATTCTGGATGTTCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGAT 9338 |||||||||||| || ||||| || ||||| ||||| ||||| ||||||| ||||| || Sbjct 321 CCATTCTGGATGCTCATGTTTAAGCACATCACACACTCTGTTATGTTCCCGCAGCCAAAT 262 Query 9339 AGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACG 9398 |||||||||||||| || ||||| ||||| ||||| | || || || ||||| | || Sbjct 261 TGTGGCGTACATCATCAGACCAGGCACCAGACCAAAGACTTCCTGCCCCACAGCAAACCG 202 Query 9399 CATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGG 9458 || || ||| || || | || || |||||||| | ||||| |||||||| | ||| Sbjct 201 CAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCGACCTGAGTATCTTTGACTGTGGG 142 Query 9459 GGGATACATTTCACCGTCAATCATCTGATACTTCATTTTTCCGT-CTTTGAAGAGACGCA 9517 |||||||| || || |||| |||||||| ||||||||||| | ||||||| || |||| Sbjct 141 AGGATACATCTCGCCACCAATTATCTGATATTTCATTTTTCCATCCTTTGAA-AGGCGCA 83 Query 9518 GCTTAGTCTGT 9528 | ||| |||| Sbjct 82 GTTTATGCTGT 72 >seq407932 Length=7429 Score = 165 bits (182), Expect = 1e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 ||||| ||||| ||||| || |||||||||||| || ||||| || ||||| ||||| Sbjct 6032 GTCTGAAACAGCTGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 5973 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| ||||||| ||||| || |||||||||||||| || ||||| || || ||||| Sbjct 5972 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACTAGACCAAAG 5913 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | || || || ||||| | |||| || ||| || || | || || |||||||| | Sbjct 5912 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCG 5853 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| |||||||| || || |||| |||| Sbjct 5852 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCGCCACCAATTATCT 5804 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| | | |||| | ||||| || || |||||| ||| ||| | || Sbjct 4987 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 4928 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 4927 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 4868 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 || |||| | || | ||||| |||||||||||| | | | ||| || |||| Sbjct 4867 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTCTTTTGAATCAGGAAGCTC 4808 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 | | | |||| || ||||| Sbjct 4807 TTTCCTCCCTGAAAAATGAGAA 4786 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | || ||||| || || | ||| || ||||| |||| || | | Sbjct 4379 TCACCTTTCACACCCATGGGCGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 4320 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 |||||||| || || || || |||||||||||| || ||||| | | || || | Sbjct 4319 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTATAAGTT 4260 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || ||||| ||||||| || ||||| |||| Sbjct 4259 GGCGGGCTCTCAATCAGATGTGATCTCGCTGA 4228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713100257173760