Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq418776 149 1e-30
seq258579 145 2e-29
seq364176 136 9e-27
seq356745 109 1e-18
>seq418776
Length=96061
Score = 149 bits (164), Expect = 1e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || | | || || |||||||| |||||||| | |||
Sbjct 54882 CAGATCTTCGTGAAGACCCTGANNNGCAAGACCATCACCCTGGAGGTGGAGTCCAGTGAC 54941
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| || || ||||| ||||| || ||||| ||||| || ||| ||||
Sbjct 54942 ACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACTAGCAG 55001
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| |||||||| || || |||||||| |||||||| | |||||| | ||||| ||| ||
Sbjct 55002 AGGCTTATCTTTGCAGGCAAACAGCTGGAAGATGGCTGCACTCTTTCTGATTACAACATC 55061
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| ||||| |||||| |||| || ||
Sbjct 55062 CAGAAAGAGTCAACATTGCACCTGGT 55087
>seq258579
Length=20613
Score = 145 bits (160), Expect = 2e-29
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || || || || || ||||| || ||||| ||| ||| ||
Sbjct 18972 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCCTCGGAT 19031
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| || || || || || ||||| |||||||| |||||||| ||||| |||||||||
Sbjct 19032 GCAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAA 19091
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| || || || || || ||||||||| | | | | | || || |||||
Sbjct 19092 AGACTGATCTTTGCAGGCAAGCAACTGGAAGATGGACGTATTTTGTCTGACTACAACGTT 19151
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || | || |||||||| ||||||||
Sbjct 19152 CAAAAGGAGTCCGCTCTTCATCTTGTGTTGAGACT 19186
>seq364176
Length=18321
Score = 136 bits (150), Expect = 9e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || || || || || ||||| |||||||| ||| || ||
Sbjct 5562 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTTGGAT 5503
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| | || || || || ||||| ||||| || |||||||| ||||| |||||||||
Sbjct 5502 ACAACAGAAAATGTAAACGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAA 5443
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| || || || || || ||||||||| | ||| | | || | |||
Sbjct 5442 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACCACAACACT 5383
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || || || |||||||| ||||||||
Sbjct 5382 CAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 5348
>seq356745
Length=38052
Score = 109 bits (120), Expect = 1e-18
Identities = 118/155 (76%), Gaps = 1/155 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||| |||| || || ||||||| | | ||||| ||| |||| ||| |||||
Sbjct 20042 CAGATTTTCATGAAGACCCTGACAGGAAGACC-ATCACTCTCAAGGTTGAACCTTCAGAT 19984
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||| ||||| ||||||||||||||||| ||||||||
Sbjct 19983 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATCCCTCCTAACCAGCAA 19924
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078
|||| ||||| || || || || || || |||||
Sbjct 19923 AGACTGATCTTTGCTGGCAAGCAACTGGAGGATGG 19889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1197231350948136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |