Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq411564 107 2e-18 seq418776 95.1 1e-14 seq359707 93.3 4e-14 seq331670 84.2 2e-11 >seq411564 Length=61085 Score = 107 bits (118), Expect = 2e-18 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | |||||| | ||||| ||||| || ||| ||||| ||||| || || Sbjct 40439 ACAGCCACCCCTTAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATC 40498 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || | ||||| |||| || ||||| ||||| || || || || | ||| ||||| | Sbjct 40499 AGAAATAGTGCGGCCGTCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGG 40558 Query 41752 GGGA--ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC 41809 ||| | || ||||| ||| ||| || ||||| | | ||||| || | | Sbjct 40559 GGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGC 40618 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||||| || || || || |||||||| ||||| |||| |||||||| Sbjct 40619 TCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 40671 >seq418776 Length=96061 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| |||| || ||| ||||| ||||| || || Sbjct 55109 ACAGCCACCCCTCAGACGGAGGACCAGGTGCAATGTTGACTCTTTCTGGATGTTGTAATC 55050 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || |||| | || || ||||| ||||| || || || || | ||| | ||| | Sbjct 55049 AGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTAGTCAGG 54990 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || ||||| ||| ||| || ||||| | | ||||| || ||||| Sbjct 54989 GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGACTC 54930 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || | |||| ||||| ||||| |||||||| Sbjct 54929 CACCTCCAGGGTGATGGTCTTGCNNNTCAGGGTCTTCACGAAGATCTGCAT 54879 >seq359707 Length=5412 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| || ||| ||||| ||| | || || Sbjct 2562 ACAGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGCTGTAATC 2621 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || | ||| | | || || ||||| ||||| || || || || | ||| ||||| | Sbjct 2622 AGAAGGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGG 2681 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || || || ||| ||| || ||||| | | ||||| || ||||| Sbjct 2682 GGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTTGATGGTGTCACTGGACTC 2741 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||| || || || || || |||| ||||| ||||| |||||||| || Sbjct 2742 CACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTT 2795 >seq331670 Length=23129 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| ||||| ||||| || || || || ||||| | || || | ||| ||||| || || Sbjct 21991 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCATCTGTTTGCCTGCAAA 22050 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 | || | ||| ||||| ||||| | || || || ||| ||| || || || | || Sbjct 22051 GAGGAGCCTCTGCTGGTCAGCGGGGATGCCTTCTTTATCCTGGATCTTG-GCATCCAGGA 22109 Query 41791 CGA-CACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | ||||| || | ||||||||||| || || || || | ||||| ||||| | Sbjct 22110 CATTCTCGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCAGGTCAGGGTCTTCA 22169 Query 41850 CGAAAATCTGCAT 41862 ||| |||||||| Sbjct 22170 TGAAGATCTGCAT 22182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 459868559412800