Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq411564 107 2e-18
seq418776 95.1 1e-14
seq359707 93.3 4e-14
seq331670 84.2 2e-11
>seq411564
Length=61085
Score = 107 bits (118), Expect = 2e-18
Identities = 164/233 (70%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | |||||| | ||||| ||||| || ||| ||||| ||||| || ||
Sbjct 40439 ACAGCCACCCCTTAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATC 40498
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|| | ||||| |||| || ||||| ||||| || || || || | ||| ||||| |
Sbjct 40499 AGAAATAGTGCGGCCGTCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGG 40558
Query 41752 GGGA--ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC 41809
||| | || ||||| ||| ||| || ||||| | | ||||| || | |
Sbjct 40559 GGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGC 40618
Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||||||| || || || || |||||||| ||||| |||| ||||||||
Sbjct 40619 TCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 40671
>seq418776
Length=96061
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | ||||| | ||||| |||| || ||| ||||| ||||| || ||
Sbjct 55109 ACAGCCACCCCTCAGACGGAGGACCAGGTGCAATGTTGACTCTTTCTGGATGTTGTAATC 55050
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|| || |||| | || || ||||| ||||| || || || || | ||| | ||| |
Sbjct 55049 AGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTAGTCAGG 54990
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811
||| | || ||||| ||| ||| || ||||| | | ||||| || |||||
Sbjct 54989 GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGACTC 54930
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||||| || || || || | |||| ||||| ||||| ||||||||
Sbjct 54929 CACCTCCAGGGTGATGGTCTTGCNNNTCAGGGTCTTCACGAAGATCTGCAT 54879
>seq359707
Length=5412
Score = 93.3 bits (102), Expect = 4e-14
Identities = 161/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | ||||| | ||||| ||||| || ||| ||||| ||| | || ||
Sbjct 2562 ACAGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGCTGTAATC 2621
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|| | ||| | | || || ||||| ||||| || || || || | ||| ||||| |
Sbjct 2622 AGAAGGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGG 2681
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811
||| | || || || ||| ||| || ||||| | | ||||| || |||||
Sbjct 2682 GGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTTGATGGTGTCACTGGACTC 2741
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||||||| || || || || || |||| ||||| ||||| |||||||| ||
Sbjct 2742 CACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTT 2795
>seq331670
Length=23129
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||| ||||| ||||| || || || || ||||| | || || | ||| ||||| || ||
Sbjct 21991 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCATCTGTTTGCCTGCAAA 22050
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790
| || | ||| ||||| ||||| | || || || ||| ||| || || || | ||
Sbjct 22051 GAGGAGCCTCTGCTGGTCAGCGGGGATGCCTTCTTTATCCTGGATCTTG-GCATCCAGGA 22109
Query 41791 CGA-CACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849
| | | ||||| || | ||||||||||| || || || || | ||||| ||||| |
Sbjct 22110 CATTCTCGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCAGGTCAGGGTCTTCA 22169
Query 41850 CGAAAATCTGCAT 41862
||| ||||||||
Sbjct 22170 TGAAGATCTGCAT 22182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 459868559412800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |