Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq123671 464 4e-126 seq123397 396 2e-105 seq123617 286 2e-72 seq123321 210 2e-49 seq123633 156 3e-33 seq123635 120 2e-22 seq123643 86.0 5e-12 >seq123671 Length=7472308 Score = 464 bits (514), Expect = 4e-126 Identities = 442/565 (78%), Gaps = 0/565 (0%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||| ||||||||||||| | ||| || ||||| |||| Sbjct 48501 ATTAATTGTTCTTTTCATATACTTCACATTTGTACTTAATGCCTTTTTCCTCTTGGACAT 48442 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 || |||||| |||||||||| | |||||| ||||| || | ||||| |||||| | Sbjct 48441 CCAAAGGAACACCTGGATATTCTGGAAGAAGTTTATATTTTTCAAAATCAATTTCTGGGA 48382 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| | |||| |||||| |||||||||||||| |||||||| ||| ||| || || || Sbjct 48381 AAAATGCATCACTTTCAAATTCTTGCATGATCCTTGTCACAAATAGTCTAACATGGCCTG 48322 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | |||| |||| ||||| |||||||| ||||| | |||||| ||||||||||||| Sbjct 48321 GCTTGTTCATGGCTTTCTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTT 48262 Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAA 4267 ||||| ||||||||| | || |||||| ||| |||||||| | ||| || || | || Sbjct 48261 TATTTTTTAATTCTGGATCTTTAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAA 48202 Query 4268 AATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTT 4327 ||||||||| |||| | ||||| | ||| | |||||||| | |||||||||| | | Sbjct 48201 AATGAGCTCCCATTGGAGGTTCCTTGATTTCTCTACTGAGAACTATATTAATTCTGTCCT 48142 Query 4328 TTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAAT 4387 ||||||| || |||||||| ||||| |||||||| ||||| ||||||||||||| | || Sbjct 48141 TTAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCACAT 48082 Query 4388 TCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCA 4447 |||||||| || ||| ||||| ||||||||||||||||||| | || |||||| Sbjct 48081 TCTGTTTACCTTCTACTGAAGAGACTGTAGTCATTCTTTGGAAATACTGGAATTCATTCC 48022 Query 4448 TAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAA 4507 | | |||||| |||| ||| || | ||||| | ||||||||| || | ||||| | Sbjct 48021 TGAACAGTGGCCAGGGCAGGTTCCCATTCTTGCCGAAGCCCATGTTCTGGGACACAGCGA 47962 Query 4508 CAATGCAGTTTAGTGCTTGAACCAT 4532 | ||||||||| ||| ||||||| Sbjct 47961 CGATGCAGTTTGGTGGACGAACCAT 47937 Score = 352 bits (390), Expect = 2e-92 Identities = 332/423 (78%), Gaps = 0/423 (0%) Strand=Plus/Minus Query 4098 ACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCAT 4157 || |||||| |||||||||||||| |||||||| ||| ||| || || ||| | |||| Sbjct 345242 ACTTTCAAATTCTTGCATGATCCTTGTCACAAATAGTCTAACATGGCCTGGCTTGTTCAT 345183 Query 4158 AGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAA 4217 ||||| ||||| |||||||| ||||| | |||||| |||||||||||||||||| ||| Sbjct 345182 GGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTTTTAA 345123 Query 4218 TTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCT 4277 |||||| | ||| |||||| ||| |||||||| | || || || | ||||||||||| Sbjct 345122 TTCTGGATCTTCAATAAGTTCTAAGGCATCATCCAGACGTTTGGCAAGAAAATGAGCTCC 345063 Query 4278 ATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCG 4337 |||| | ||||| | ||| | |||||||| | |||||||||| | |||||||| || Sbjct 345062 CATTGGAGGTTCCTTGACTTCTCTCCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCG 345003 Query 4338 GTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATC 4397 |||||||| ||||| |||||||| ||||| ||||||||||||| | |||||||||| | Sbjct 345002 ATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCACATTCTGTTTACC 344943 Query 4398 TGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCATAAGTCTTGG 4457 | ||| ||||| ||||||||||||||||||| | || |||||| | || || Sbjct 344942 TTCTACTGAAGAGACTGTAGTCATTCTTTGGAAATACTGGAATTCATTCCTGAGCAGTGA 344883 Query 4458 CCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAACAATGCAGTT 4517 ||| |||| ||| || | ||| ||||| ||||||| || | ||||| || |||||||| Sbjct 344882 CCAGGGCAGGTTCCCGTTCTTGACAATGTCCATGTTCTGGGACACAGCGACGATGCAGTT 344823 Query 4518 TAG 4520 ||| Sbjct 344822 TAG 344820 >seq123397 Length=8552932 Score = 396 bits (438), Expect = 2e-105 Identities = 419/554 (76%), Gaps = 20/554 (4%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 8018608 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 8018667 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 || |||||| |||||||||| | |||||| ||||| || | ||||| |||||| | Sbjct 8018668 CCAAAGGAACACCTGGATATTCTGGAAGAAGTTTATATTTTTCAAAATCAATTTCTGGGA 8018727 Query 4088 AAAAGGTGTCACATTC-AAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 |||| | |||| ||| ||| |||||| ||||||| |||||||| ||| ||| || || | Sbjct 8018728 AAAACGCATCACTTTCAAAATTCTTGCTTGATCCTTGTCACAAATAGTCTAACATGGCCT 8018787 Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACT 4206 || | |||| ||||| ||||| | | ||||| |||||||||||| Sbjct 8018788 GGCTTGTTCATGGCTTCCTTATAAAGA--------------CATCCAAACCATGTCTACT 8018833 Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266 |||||| ||||||||| | ||| |||||| || |||||||| | ||| || || | | Sbjct 8018834 TTATTTTTTAATTCTGGATCTTCAATAAGTTCAAAGGCATCATCCAGACTTTTGGCAAGA 8018893 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326 |||||||||| | |||| | ||||| ||||| | |||||||| | |||||||||| | Sbjct 8018894 AAATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCC 8018953 Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386 |||||||| | |||||||| ||||| |||||||| ||||| ||| ||||||||| | | Sbjct 8018954 TTTAAAGGTCAATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACGCATAATCACCACA 8019013 Query 4387 TTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTC 4446 ||||||||| || ||| ||||| ||||||||||||||||||| | || |||||| Sbjct 8019014 TTCTGTTTACCTTCTACTGAAGAGACTGTAGTCATTCTTTGGAAATACTGGAATTCATTC 8019073 Query 4447 ATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCA 4506 | || |||| || ||| || | ||||| ||||||||||| || | ||||| Sbjct 8019074 CTGAGCGGTGGC-----CAGGTTCCCGTTCTTGCCGATGCCCATGTTCTGGGACACAGCG 8019128 Query 4507 ACAATGCAGTTTAG 4520 || ||||||||||| Sbjct 8019129 ACGATGCAGTTTAG 8019142 >seq123617 Length=4458616 Score = 286 bits (316), Expect = 2e-72 Identities = 325/432 (75%), Gaps = 7/432 (2%) Strand=Plus/Plus Query 3979 TTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACA 4038 || || |||||||||||||| ||||||| |||||| || || ||| ||| ||||| Sbjct 3754041 TTTTCTTATACTTCAAATTTATACTTAACGACTTTCTCCTCCTGGACA---GAAGGAACA 3754097 Query 4039 CTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAG-GTGTC 4097 | ||| |||||| | |||||| || || || | |||| ||| ||||||| | || Sbjct 3754098 CCTGGGTATTCTGGGAGAAGTTTATAATTTTCCAAATCATTTTCAAGAAAAAAATGCATC 3754157 Query 4098 ACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCAT 4157 || |||||| |||||| |||| | | |||||| | | |||||| || ||| | |||| Sbjct 3754158 ACTTTCAAATTCTTGCGTGATTATTGCCACAAATAATCTAAGATGGCCTGGCTTGTTCAT 3754217 Query 4158 AGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAA 4217 ||||| ||||| | ||||| | ||| |||| | ||||| |||| |||||||| ||| Sbjct 3754218 GGCTTCCTTATATA--GAACTGCTTCCTGCTATCAA-ACCATATCTAGTTTATTTGTTAA 3754274 Query 4218 TTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCT 4277 | |||| || ||| |||||| ||| |||||||| | ||| || || | ||||||||||| Sbjct 3754275 TGCTGGTTGCTCGATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCC 3754334 Query 4278 ATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCG 4337 |||||| | ||||| ||||| | |||||| | ||||||||| ||||||||| | Sbjct 3754335 CTGTGGAGGTTCCTTGAGTTCTCTATTGAGAATTATGTTAATTCTGTCTTTTAAAGATTG 3754394 Query 4338 GTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATC 4397 ||||| || ||||| |||||| ||||| ||||||||||||| |||||||||||||| Sbjct 3754395 ATTCTTTTCTGGAATGTTGAACCACGTCTTCCTACCCATAATCACCAAATTCTGTTTATC 3754454 Query 4398 TGGTACAGAAGA 4409 | ||| || || Sbjct 3754455 TTCTACTGATGA 3754466 >seq123321 Length=13647482 Score = 210 bits (232), Expect = 2e-49 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || | || |||| Sbjct 7753681 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTACTGGACAT 7753740 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||| |||||| || ||||||| | |||||| || || || ||||| || ||||| Sbjct 7753741 CAGAAGGAACACCTGTATATTCTGGGAGAAGTTTATACTTTTCCGAATCAATTTGTGGAA 7753800 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| || |||| |||||| |||||||||||||| |||||||| ||| |||||| || || Sbjct 7753801 AAAATGTATCACTTTCAAATTCTTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCTG 7753860 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | | || | ||| || | |||||||| ||||| | |||||| ||||||||||||| Sbjct 7753861 GCTTGTTTATGGATTCCTTGCAGACAGAACTGCCTCCCACTATCCAAACCATGTCTACTT 7753920 Query 4208 TATT 4211 | || Sbjct 7753921 TTTT 7753924 >seq123633 Length=11366342 Score = 156 bits (172), Expect = 3e-33 Identities = 182/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCAC 26986 ||| |||| ||| | | || | | |||||||| || || || || ||||| || | ||| Sbjct 493897 AGAAAGCTCTTAAGCCAAATGGCGGACAATGGGGGTGACACAGGTACAGCCCACGGCCAC 493956 Query 26987 TAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAG 27046 ||||||||||| |||| || || | ||||||| | ||| | | | || | || || Sbjct 493957 CAGCATCTTCTCCAGCCGGAAGGAGTGAGGGCAGTGCTGAGACTCCCTTCGGAGGACCAG 494016 Query 27047 AATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAAC 27106 |||||||| ||||| | ||| ||||||||||| | ||| || ||||| |||||||| | Sbjct 494017 GATCTCTTGCTGGATGGTGACAGAGTTCATGTGATGGTCCACCTTCCCTTCAGCATTGAT 494076 Query 27107 ACATCCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTC 27166 ||| ||| ||| | ||||| || ||||| ||||||||||| || || || | || || Sbjct 494077 ACAGCCTGAGTGACTGCACTTGGCCTCCCAGATCACAGAGGGGTACCTCTCAGGGTCCTC 494136 Query 27167 ATTGCG 27172 |||||| Sbjct 494137 ATTGCG 494142 >seq123635 Length=11332318 Score = 120 bits (132), Expect = 2e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| |||| |||||||||||||| ||||||||| Sbjct 6733473 TTATAAACAGAACTGCCTCCCACTATCCAAACCACGTCTACTTTATTTGTTAATTCTGGA 6733532 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 | ||| |||||| ||| |||||||| | ||| || || | ||||||||||| | |||| Sbjct 6733533 TCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTTTGGA 6733592 Query 4285 AGCTCC 4290 | ||| Sbjct 6733593 GGTTCC 6733598 Score = 120 bits (132), Expect = 2e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 6736880 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 6736939 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| |||||||||||| || Sbjct 6736940 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 6736988 Score = 98.7 bits (108), Expect = 7e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||| ||||| | |||| |||||| |||||||| Sbjct 6730790 AAGTTTATATTTTTCAAAATCAATTTCTGGGAAAAATGCATCACTTTCAAATTCTTGCAT 6730849 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| ||| || || ||| | |||| ||||| || | | ||| Sbjct 6730850 GATCCTTGTCACAAATAGTCTAACATGGCCTGGCTTGTTCATGGCTTCCTTTGAAATAGA 6730909 Query 4176 AC 4177 || Sbjct 6730910 AC 6730911 Score = 82.4 bits (90), Expect = 6e-11 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 6726151 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 6726210 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAA 4057 || |||||| |||||| ||| | |||| Sbjct 6726211 CCAAAGGAACACCTGGATA-TCTGTAAAAA 6726239 >seq123643 Length=11888911 Score = 86.0 bits (94), Expect = 5e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||| || || |||||||||||||| || ||||| || || || | ||| |||| Sbjct 576468 CTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATCCCCTT 576527 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 || ||||||| | || || || ||| || || || || ||||| |||||||||| Sbjct 576528 CAGCTCTGTCGGAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCATTGGCATCCCAAA 576587 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 576588 TTTTCACTCC 576597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360685750543181