Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq123338 104 3e-17 seq123504 100 3e-16 seq123318 100 3e-16 seq123149 100 3e-16 seq123220 98.7 1e-15 seq123463 95.1 1e-14 seq122981 95.1 1e-14 seq104493 95.1 1e-14 seq123665 89.7 6e-13 seq123625 87.8 2e-12 seq123193 86.0 7e-12 seq123192 86.0 7e-12 seq13791 86.0 7e-12 >seq123338 Length=16093809 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || |||||||||| ||||| || | || || |||||||| || || || Sbjct 10050979 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 10050920 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||||| || | || |||||| ||| ||| || || | | Sbjct 10050919 GATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTT 10050860 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 10050859 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 10050800 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 10050799 GAAGATCTGCAT 10050788 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 15446534 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 15446475 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 15446474 TACTAACGAGGAGTGA 15446459 >seq123504 Length=3144647 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 3060625 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 3060684 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 3060685 ATACTAACGAGGA 3060697 >seq123318 Length=9803767 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4060806 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4060747 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 4060746 TACTAACGAGGAT 4060734 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4063774 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4063715 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 4063714 TACTAACGAGGA 4063703 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | |||| |||| ||| |||||| || || ||||| |||| | Sbjct 4075224 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4075165 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||| || || || || || || | ||||||||| | || Sbjct 4075164 AGGGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 4075105 Query 43077 ACGCTCTCCTTGTCCATG-ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || ||| | | || || || |||| || | | ||||| || | ||||| Sbjct 4075104 ATGC-CTTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 4075046 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||||||||| || || || ||||| |||||||| |||||| Sbjct 4075045 CTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCATT 4074997 >seq123149 Length=289317 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 160168 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 160227 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 160228 ATACTAACGAGGA 160240 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 106305 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 106246 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 106245 TACTAACGAGGA 106234 >seq123220 Length=2346150 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1299221 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1299162 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1299161 TACTAACGAGGA 1299150 >seq123463 Length=2538162 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||||||| |||||||||||||||||||||||| ||| ||||||||| Sbjct 1732038 CTCCCCGTCGGGGAATCGAATCCTGGTCTCCCGCGTGACAGGCGGGGATATTCACCACTA 1731979 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1731978 TACTAACGAGGA 1731967 >seq122981 Length=522162 Score = 95.1 bits (104), Expect = 1e-14 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 516881 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAG 516822 Query 60136 GA 60137 || Sbjct 516821 GA 516820 >seq104493 Length=64893 Score = 95.1 bits (104), Expect = 1e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||| | ||||||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 35623 CTCCTGGTCAGGGAATCAAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 35564 Query 60126 TACTA 60130 ||||| Sbjct 35563 TACTA 35559 >seq123665 Length=4972950 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2554123 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 2554064 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2554063 TACTAACGAGGA 2554052 >seq123625 Length=6010287 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||| ||||||||||||||| |||||||||||| ||||| |||| Sbjct 1248062 GGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGGGATACTCACCACTGTACTAACGAG 1248121 Query 60136 GAT 60138 ||| Sbjct 1248122 GAT 1248124 >seq123193 Length=20752209 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || |||||| |||||||| |||||||| |||||||||| | |||||||||||| Sbjct 7683028 CTCCCCGTCAGGGAGTCGAACCCAGGTCTCCCACGTGACAGGCAGGGATACTCACCACTG 7682969 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 7682968 TACTAACGAGGA 7682957 >seq123192 Length=8960316 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | |||||||||||| ||||||||||||||||||| | ||||||||||||| Sbjct 1013549 CTCCTCGTCGGGGAATCGAACCTCGGTCTCCCGCGTGACAGGCCGGGATACTCACCACTA 1013608 Query 60126 TACTACCGAGGA 60137 | || |||||| Sbjct 1013609 CATTAACGAGGA 1013620 >seq13791 Length=1043 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGC-GGACATAC-TCACCAC 60123 |||| || | ||||||||||||| ||||||||||||||||||| || |||| ||||||| Sbjct 103 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGGATACGTCACCAC 44 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 43 TATACTAACGAGGA 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570899611172680