Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq123442 116 3e-21 seq123338 104 2e-17 seq123197 91.5 1e-13 seq123636 82.4 7e-11 seq123262 82.4 7e-11 seq77427 82.4 7e-11 >seq123442 Length=2042734 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| || || || ||||| || || || || Sbjct 178219 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 178278 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || ||||||||| || ||||| || ||||| ||||||||||| ||||| || Sbjct 178279 CCCAAGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGGTA 178338 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 178339 CCTGTCTCTGTCTGAGACTCAATGATGGC 178367 >seq123338 Length=16093809 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 10050788 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 10050847 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||| ||||| ||| | || ||||||||| Sbjct 10050848 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAG 10050907 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| ||||||| ||| | ||||| ||| Sbjct 10050908 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 10050967 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||| ||||| || || ||||| ||| | |||||||| || Sbjct 10050968 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTTCGTCTGAGGGGTGG 10051014 >seq123197 Length=3943935 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| | ||| || || || ||||| |||| ||||| || Sbjct 831266 AAGATGCAGATTTTCGTGAAGACCCGGACGGGGAAGACCATCACTCTCGAGGTTGAGCCC 831207 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | || |||| || || | || ||| |||||||| | || || ||| Sbjct 831206 TCGGATACAGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 831147 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||| | | || || || || || || || ||||||| | ||| ||| || || || Sbjct 831146 CAGAAAAGACTGATCTTTGCGGGAAAGCAACTGGAAGA-TGGATGTACTTTGTCTGACTA 831088 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||| ||||| || || ||||||||||| || | ||||| Sbjct 831087 CAACATGCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 831046 >seq123636 Length=25235462 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 57526 AGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACA 57585 ||| | | ||| |||||||||| ||||| || | || || ||||||||||| ||||| | Sbjct 19801413 AGAGTTCTCGTCGATTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATA 19801472 Query 57586 AAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623 |||||||| | ||||| || ||||| | ||||| ||| Sbjct 19801473 AAAAGGCACAGGCATCCTTCTGGACAGCAGAAGAGGTA 19801510 >seq123262 Length=1326122 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| |||||||||| ||| || | ||||| |||| ||||| || Sbjct 347929 AAGATGCAGATTTTCGTGAAGACTCTGATAGGGAACATCATCACTCTCGAGGTTGAGCCC 347988 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || | | |||||| | | || || ||| Sbjct 347989 TCAGATACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAAGAATTCCTCCTGAC 348048 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| || || || |||||||| || || |||| ||| || || || Sbjct 348049 CAGCAGA--CTGATCTTTGCTGGCAAGCAACTGAAAGATGGACATACTTTGTCTGACTAC 348106 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||||||||| || || ||||||||||| || Sbjct 348107 AACATTCAAAAGGAGTCCACTCTTCATCTAGT 348138 >seq77427 Length=594 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| |||||||||| ||| || | ||||| |||| ||||| || Sbjct 387 AAGATGCAGATTTTCGTGAAGACTCTGATAGGGAACATCATCACTCTCGAGGTTGAGCCC 328 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || | | |||||| | | || || ||| Sbjct 327 TCAGATACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAAGAATTCCTCCTGAC 268 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| || || || |||||||| || || |||| ||| || || || Sbjct 267 CAGCAGA--CTGATCTTTGCTGGCAAGCAACTGAAAGATGGACATACTTTGTCTGACTAC 210 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||||||||| || || ||||||||||| || Sbjct 209 AACATTCAAAAGGAGTCCACTCTTCATCTAGT 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445050772193520