Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq123546 219 6e-52 seq123321 201 1e-46 seq123442 140 4e-28 seq123465 123 3e-23 seq123636 102 1e-16 >seq123546 Length=6856764 Score = 219 bits (242), Expect = 6e-52 Identities = 238/316 (75%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 9392 AGCAGACAGGACCAGCTCCACTGTTTCACTTTGCACAAATATCCTCAAAAGTCCTGACAA 9451 || || || |||||||||||||||||||| | ||| | | |||| | ||||||||| Sbjct 2023071 AGAAGCCACGACCAGCTCCACTGTTTCACCATAACAAAACACCTTCAAGATTCCTGACAA 2023130 Query 9452 AATTAAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGA 9511 | |||||||||||| | ||| | |||||||||| ||| ||| |||||||||| || Sbjct 2023131 GAACAAAATCCACAAACCAGAAAATAGGCCTGCTCCAAATTTGCTGCAATCTCTCTTAGA 2023190 Query 9512 TTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCAT 9571 || |||||||| |||| | || |||| |||||| ||||| || ||| |||||| Sbjct 2023191 CTGCAGAGTATACACAGTTGAATCAGGAAATACTGCATGGGTCAGTATAAAATCTTGCAG 2023250 Query 9572 AACGACATGCACATCATAGAAAGTAACAACAGAGGCCAGCGTTAGAGATTCCGACAGTGT 9631 || | || |||||| ||||||||||| ||||||| || |||| |||| ||| | | Sbjct 2023251 GACAAGATATACATCACGGAAAGTAACAATGGAGGCCACAGTCAGAGCTTCCAACAATAT 2023310 Query 9632 AAATCCACAAAGCAGGTATAAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAA 9691 |||| || |||||||||| || ||||| || |||||||||| |||||||| || || Sbjct 2023311 AAATACAAAAAGCAGGTACGGGTTAAGGGGTTGCTTATGTCTGTTTAAAGTCATGGCTAA 2023370 Query 9692 AATCAAGCCTATAGAT 9707 ||||| || | |||| Sbjct 2023371 AATCAGACCAAAAGAT 2023386 Score = 129 bits (142), Expect = 8e-25 Identities = 133/170 (78%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 9230 TTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAA 9289 ||||| |||| | ||||||||| || || || || || || || |||| ||||||||| Sbjct 2022679 TTTCT-ATTAATTGCTTCCAAAACTTGGAA-AGGTGTAA-AAGAGGTTGAGGATATCCAA 2022735 Query 9290 GTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTG 9349 ||||| |||||| ||||| ||||| |||||||| || ||| || || |||||||| Sbjct 2022736 GTAGAGGCTGATAGCAGCTAATACATACTCTTCAGGTGACAGCCTACACATCAGTGAGTG 2022795 Query 9350 CGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACA 9399 ||||||||||| ||||||| |||||| | |||||| || | ||||| || Sbjct 2022796 TGTGTCATAGATGATGAATCTGCAGAAAAGAAGGGCTCCTACAGCAGCCA 2022845 >seq123321 Length=13647482 Score = 201 bits (222), Expect = 1e-46 Identities = 159/191 (83%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || ||||||| | ||||||||| | ||||||| |||||||| |||||||||||||||||| Sbjct 7229201 TTTTTATTAGCTGCTTCCAAAACCCGTAACAGGTGCAAGAAGAGATTGATGATATCCAAG 7229142 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| ||||| | ||||| ||||| |||||||| || ||| | || || |||||||| Sbjct 7229141 TAGAGGTTGATGGCAGCTAATACATACTCTTCAGGTGACAGCCTGTGCATCAGTGAGTGT 7229082 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||||||||| | |||||| || ||||| || ||||| |||| Sbjct 7229081 GTGTCATAGATGATGAATCCGCAGAAAAGAAGGGCTCCCCCAGCAGCCAAGACCAACTCC 7229022 Query 9411 ACTGTTTCACT 9421 ||||| ||||| Sbjct 7229021 ACTGTCTCACT 7229011 Score = 143 bits (158), Expect = 3e-29 Identities = 103/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| || |||| ||||||| |||||| | ||||| Sbjct 7226230 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGACTGTAAAGTATATACAGTCAAACCAAGA 7226171 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||| |||||| ||||||||||||| || |||| |||||||||||||||||| Sbjct 7226170 AATACTGCACAAGTCAGTATGAAAGCTTGCAGGACAACATACACATCATAGAAAGTAAC 7226112 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 7214551 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 7214492 Query 9907 TGGAGGAGCACGCGTAGAGG 9926 | || ||||| | |||| || Sbjct 7214491 TAGAAGAGCAGGGGTAGCGG 7214472 >seq123442 Length=2042734 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 170365 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 170424 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 170425 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 170484 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 170485 CTGTTTCTTACACCATA 170501 Score = 105 bits (116), Expect = 9e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||| | || || ||||| || || || || | | Sbjct 193906 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 193965 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 193966 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 194025 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 66966 ||| || || || || ||| | |||| |||||||| |||||||||| Sbjct 194026 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACCTTCATAG 194073 Score = 96.9 bits (106), Expect = 5e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 175057 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 175116 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||||| |||||| | ||| || || | || ||||| || | Sbjct 175117 AATAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGGT 175176 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 65596 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| Sbjct 175177 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 175234 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||| ||||| |||||||| ||||||||||| || | || | || |||| | Sbjct 181459 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 181518 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 181519 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 181578 Query 66176 CGGTTCCAAGTATATGGC 66193 ||||||| ||| || || Sbjct 181579 AGGTTCCAGGTAAATAGC 181596 >seq123465 Length=11796121 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 5862561 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 5862502 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| |||||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 5862501 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 5862442 Query 36300 C 36300 | Sbjct 5862441 C 5862441 Score = 111 bits (122), Expect = 2e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 5860822 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 5860763 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | |||||||||||||| |||||| Sbjct 5860762 AATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTCT 5860717 >seq123636 Length=25235462 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 19811099 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 19811040 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 19811039 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGC 19810981 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 19801509 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 19801450 Query 36716 TATTGAATTGGAAAAATAACAAATC 36740 || || |||||||| || ||||||| Sbjct 19801449 TACTGGATTGGAAAGATGACAAATC 19801425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657116177614040