Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq123643 132 4e-26 seq123671 100 2e-16 seq123397 89.7 4e-13 >seq123643 Length=11888911 Score = 132 bits (146), Expect = 4e-26 Identities = 127/163 (78%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||| |||||| ||| ||||||| || || || ||||| |||||||| ||||| || | Sbjct 574097 TCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGG 574156 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||| |||||||| ||||||||||| |||||| Sbjct 574157 GCACACCCAGGCCCATGTCCCCCGACCGCTGGTACAACTGGCAGGACAACTCCCCATTCA 574216 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 ||||||| ||||| || | |||| || || ||||| ||||| Sbjct 574217 CCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCAT 574259 >seq123671 Length=7472308 Score = 100 bits (110), Expect = 2e-16 Identities = 249/372 (67%), Gaps = 16/372 (4%) Strand=Plus/Minus Query 2797 AAAATTAATTGATGGAAAAAATACATCACAATCAAAACTCTCCATAATGCGCGTAATATA 2856 ||||| |||| ||| |||||| |||||| ||||| | ||| || | || | | | Sbjct 48398 AAAATCAATTTCTGGGAAAAATGCATCACTTTCAAATTCTTGCATGATCCTTGTCACAAA 48339 Query 2857 TAGTTTTA-AGGGACA--CTTATAGTTAAGAACACTCTCATAAACAGATTTTCCTCCAAT 2913 |||| | | | || | ||| ||| | | ||| ||||||||| | ||||| | Sbjct 48338 TAGTCTAACATGGCCTGGCTT---GTTCATGGCTTTCTTATAAACAGAACTGCCTCCCAC 48282 Query 2914 AACCCAGACCGTGTTTAATTGTTCTTTTAGTT-TGTATTGTCTATAGAAATTAAACGCAT 2972 | ||| ||| ||| || || | ||||| || || || | ||| | | || |||| Sbjct 48281 TATCCAAACCATGTCTACTTTATTTTTTAATTCTGGATCTTTAATA-AGTTCTAAGGCAT 48223 Query 2973 CGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCTCA 3032 | || || || | || ||||| || ||||| || ||||| | |||||| || | Sbjct 48222 CATCCAGACTTTTGGCAAGAAAATGAGCTCCCATTGGAGGTTCCTTGATTTCTCTACTGA 48163 Query 3033 AAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTC 3092 || ||||||||||||| | | ||| || ||||| || || ||||| ||||| || Sbjct 48162 GAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCT 48103 Query 3093 TTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC----GTCATT 3148 | | |||||||| |||||||||| || |||| | || || | |||| |||||| Sbjct 48102 TCCTACCCATAATCACCACATTCTGTTTACCTTCTACTGAAG----AGACTGTAGTCATT 48047 Query 3149 TTCTGAAAATAC 3160 | || |||||| Sbjct 48046 CTTTGGAAATAC 48035 Score = 100 bits (110), Expect = 2e-16 Identities = 192/277 (69%), Gaps = 12/277 (4%) Strand=Plus/Minus Query 2890 CTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTT-TGT 2948 || ||||||||| | ||||| | | ||| ||| ||| || || | ||||| || || Sbjct 345176 CTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTTTTAATTCTGG 345117 Query 2949 ATTGTCTATAGAAATTAAACGCATCGTCTAG-CGTTCTCGCTAGAAAGTGTGCTCCGTGC 3007 || || ||| | | || ||||| || || |||| | || ||||| || ||||| Sbjct 345116 ATCTTCAATA-AGTTCTAAGGCATCATCCAGACGTT-TGGCAAGAAAATGAGCTCCCATT 345059 Query 3008 GGTGGTTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTC 3067 || ||||| | |||||| || | || ||||||||||||| | | ||| || ||| Sbjct 345058 GGAGGTTCCTTGACTTCTCTCCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTC 344999 Query 3068 TTTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACA 3127 || || || ||||| ||||| || | | |||||||| |||||||||| || |||| | Sbjct 344998 TTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCACATTCTGTTTACCTTCT 344939 Query 3128 ACCGATGGCGTAGAC----GTCATTTTCTGAAAATAC 3160 || || | |||| |||||| | || |||||| Sbjct 344938 ACTGAAG----AGACTGTAGTCATTCTTTGGAAATAC 344906 >seq123397 Length=8552932 Score = 89.7 bits (98), Expect = 4e-13 Identities = 171/249 (69%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 2917 CCAGACCGTGTTTAATTGTTCTTTTAGTT-TGTATTGTCTATAGAAATTAAACGCATCGT 2975 ||| ||| ||| || || | ||||| || || || || ||| | | ||| ||||| | Sbjct 8018818 CCAAACCATGTCTACTTTATTTTTTAATTCTGGATCTTCAATA-AGTTCAAAGGCATCAT 8018876 Query 2976 CTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCTCAAAA 3035 | || || | || ||||| || ||||| | || ||||| | |||||| || | || Sbjct 8018877 CCAGACTTTTGGCAAGAAAATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAA 8018936 Query 3036 TAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTCTTT 3095 ||||||||||||| | | ||| | ||||| || || ||||| ||||| || | Sbjct 8018937 CTATATTAATTCTGTCCTTTAAAGGTCAATTCTTCTCTGGAATGGAGAACCAGGTCTTCC 8018996 Query 3096 TCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC----GTCATTTTC 3151 | | |||||| |||||||||| || |||| | || || | |||| |||||| | Sbjct 8018997 TACGCATAATCACCACATTCTGTTTACCTTCTACTGAAG----AGACTGTAGTCATTCTT 8019052 Query 3152 TGAAAATAC 3160 || |||||| Sbjct 8019053 TGGAAATAC 8019061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427106422412880