Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08]
128,431 sequences; 2,828,031,685 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq123636 114 1e-20
>seq123636
Length=25235462
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232
|||||||||| || || ||||| || ||||| || || || ||||| || |||| ||| |
Sbjct 19811101 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 19811042
Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292
| | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| |
Sbjct 19811041 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGG 19810982
Query 13293 CTATCAACCTTTCACC 13308
| | || |||||| ||
Sbjct 19810981 CCACCACCCTTTCCCC 19810966
Score = 82.4 bits (90), Expect = 7e-11
Identities = 78/97 (80%), Gaps = 2/97 (2%)
Strand=Plus/Minus
Query 12970 TTCTAGTAA-CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCA 13028
|||| |||| |||||||||||| |||||||| || ||||||||||| | | |||| ||||
Sbjct 19816569 TTCT-GTAAGCAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAGAACACAATTCA 19816511
Query 13029 TTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065
|||| || | || |||| ||||||||||||||
Sbjct 19816510 TTCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 19816474
Score = 82.4 bits (90), Expect = 7e-11
Identities = 105/142 (74%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACATT 12859
|||||||||| ||||| | || |||| ||| || || | || |||||| | |
Sbjct 19821652 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTT-TCTGCCATAACTGCAAAA 19821594
Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919
||||| || ||||| ||| ||||| || ||||||||||| ||||| ||||| |||
Sbjct 19821593 CGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCCTCTAAGGAAATGTTT 19821534
Query 12920 TCCATAAAATCGAAAGGATTTT 12941
|||||||| || || |||||||
Sbjct 19821533 TCCATAAAGTCAAAGGGATTTT 19821512
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430307803586262
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |