Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq123197 150 4e-31 seq123338 147 5e-30 seq123262 125 2e-23 seq77427 125 2e-23 seq123636 120 7e-22 seq123326 116 9e-21 seq123218 116 9e-21 seq123040 113 1e-19 seq123520 104 5e-17 seq121894 96.9 8e-15 seq123609 84.2 5e-11 >seq123197 Length=3943935 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || || || || |||||||| | ||| | || ||||| Sbjct 831055 ACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGACAAAGTACATCCATCTTCC 831114 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| ||||| ||||| || || || | || |||||||| |||||||| |||||||| Sbjct 831115 AGTTGCTTTCCCGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 831174 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || |||||||||||||| ||||| || || ||||| || || || ||||| Sbjct 831175 ATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAGAGTGATGGTCTTC 831234 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || | || || || || |||||||| ||| Sbjct 831235 CCCGTCCGGGTCTTCACGAAAATCTGCATCTTG 831267 >seq123338 Length=16093809 Score = 147 bits (162), Expect = 5e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || |||||||| || || || ||| Sbjct 10050789 ATACCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCA 10050730 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || || ||||| || |||||||| || ||||| Sbjct 10050729 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGG 10050670 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| ||||| || || || || || | ||| || || || || Sbjct 10050669 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCC 10050610 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| || || || ||||| || || |||||||||||| Sbjct 10050609 ACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTTG 10050556 >seq123262 Length=1326122 Score = 125 bits (138), Expect = 2e-23 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || ||||| || |||||||| | ||| || |||| Sbjct 348138 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTTC 348079 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || |||| || |||||||| |||| ||| |||| ||| Sbjct 348078 AGTTGCTTGCCAGCAAAGATCAG--TCTGCTGGTCAGGAGGAATTCTTTCCTTATTCTGG 348021 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| || || ||||| || || || | || Sbjct 348020 ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCAACCTCGAGAGTGATGATGTTC 347961 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | || || || || || |||||||| ||| Sbjct 347960 CCTATCAGAGTCTTCACGAAAATCTGCATCTTG 347928 >seq77427 Length=594 Score = 125 bits (138), Expect = 2e-23 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || ||||| || |||||||| | ||| || |||| Sbjct 178 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTTC 237 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || |||| || |||||||| |||| ||| |||| ||| Sbjct 238 AGTTGCTTGCCAGCAAAGATCAG--TCTGCTGGTCAGGAGGAATTCTTTCCTTATTCTGG 295 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| || || ||||| || || || | || Sbjct 296 ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCAACCTCGAGAGTGATGATGTTC 355 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | || || || || || |||||||| ||| Sbjct 356 CCTATCAGAGTCTTCACGAAAATCTGCATCTTG 388 >seq123636 Length=25235462 Score = 120 bits (132), Expect = 7e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || |||||| | || || ||||||||||||||||| || ||||| ||||| |||||||| Sbjct 19810966 GGGGAAAGGGTGGTGGCCTTTGCCGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 19811025 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||||||||| || ||||| ||| | ||||| || || || | Sbjct 19811026 GCTATATTCTGGCTAAAGAAAAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTC 19811085 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 19811086 ATCAGCAGAGATGAAG 19811101 >seq123326 Length=4138734 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 104385 AGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGAT 104444 ||||||| | ||| | || ||||| ||||| || |||||||| || || || || || | Sbjct 3575519 AGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGT 3575578 Query 104445 CAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG 104504 ||||||| |||||||| |||||||| ||||| || |||||||||||| ||||| | Sbjct 3575579 CAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGG 3575638 Query 104505 GTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | || |||| | || || ||||| | || || || || | || |||||||| ||| Sbjct 3575639 GCTCCACCTTGACAGTGATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTTG 3575697 >seq123218 Length=3948948 Score = 116 bits (128), Expect = 9e-21 Identities = 157/217 (72%), Gaps = 5/217 (2%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || || ||||| ||||| | || || || || ||||| || |||||| | || | Sbjct 2102198 AGTCTCAGTACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAAA----GTACAT 2102253 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || |||| ||||| || |||||||| || || || | || |||||||| |||||||| Sbjct 2102254 CCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCCTTCC 2102313 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| | ||| | ||||||||||||| |||||| || || |||| || || Sbjct 2102314 TTATCCTGGACCTTGACCTTTACATTTTCTATGGTATCCGAGGGCTCGACCT-GAGAGTG 2102372 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCA 104558 || ||||| || | ||||| | || || ||||||| Sbjct 2102373 ATGGTCTTCCCCATCAGTGTCTCCACGAAAATCTGCA 2102409 >seq123040 Length=253963 Score = 113 bits (124), Expect = 1e-19 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || || || ||||| || |||||||| || ||||| || || || || Sbjct 221156 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCC 221097 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| || || || || || | ||| || || || || ||||| || || Sbjct 221096 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCCTGGGCTCCACCTCCAGGGTG 221037 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| || || || || || || || |||||||||||| Sbjct 221036 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 220995 >seq123520 Length=5783885 Score = 104 bits (114), Expect = 5e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | ||| ||||||||||| || || | || || | || || ||||| | Sbjct 310160 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 310219 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | |||||| || || |||||||| | ||| |||||||| ||| Sbjct 310220 AAGAAAAACAACCAAGTCTCTTTTCTTCACGTGTATCATCACTGTACCATGTTTACGTTG 310279 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || ||||| ||| | ||||||||||| Sbjct 310280 TGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 310314 >seq121894 Length=21300 Score = 96.9 bits (106), Expect = 8e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485 || || || || || || |||||||| ||||||||||||||||| ||||| || |||||| Sbjct 20626 AAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACA 20685 Query 104486 TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTT 104545 ||||||| ||||| || || ||||| || || || | || || | || || || Sbjct 20686 TTTTCTATTGTATCTGAGGGCTCAACCTCGAGAGTGATGATGTTCCCTATCAGAGTCTTC 20745 Query 104546 ACAAATATCTGCATTTTG 104563 || || |||||||| ||| Sbjct 20746 ACGAAAATCTGCATCTTG 20763 >seq123609 Length=20239142 Score = 84.2 bits (92), Expect = 5e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 65771 AAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATC 65830 ||||| ||| || || |||||||| | | |||||||| |||||||| ||| ||| Sbjct 16274275 AAACTTCTCTTTGCCAAAATTAAACAGGGCAACACCAACATTCCCTCTATAATCTTCATC 16274216 Query 65831 TATAACACCAGCACCTACATCTATAAAGTAATTATAC-GCTAATCCAGATCGGGGAGCTA 65889 ||| |||||||| ||||||||||| ||| || | | || || ||||| || ||||| | Sbjct 16274215 TATGACACCAGCTCCTACATCTATGAAG-GGTTCTGCTGCCAAGCCAGAACGAGGAGCCA 16274157 Query 65890 TTCTACCATA 65899 ||| ||||| Sbjct 16274156 CTCTTCCATA 16274147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149503748386148