Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq123643 87.8 1e-12 >seq123643 Length=11888911 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| || || || |||| |||||||||||| || || || || |||| || Sbjct 576463 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATC 576522 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || | |||| |||||| |||||| ||||||| ||| |||||||| || Sbjct 576523 CCCTTCAGCTCTGTCGGAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCATTGGCATC 576582 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||| || || || ||||| ||||| || || | ||| ||||| || Sbjct 576583 CCAAATTTTCACTCCCTTGGAAGAGAGTTCCTTAGCGTTGGTGGATCC 576630 Score = 82.4 bits (90), Expect = 5e-11 Identities = 109/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || |||||||| ||||| ||||| || || | |||||| Sbjct 574114 GCGATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGCACACCCAGGCCCATG 574173 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | ||||||||| |||||| | ||| || || | ||| | | |||||| ||||| || Sbjct 574174 T-CCCCCGACCGCTGGTACAACTGGCAGGACAACTCCCCATTCACCACGTAGAACTGGCA 574232 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || || ||| || || || || || || Sbjct 574233 GAGGGCGTGGCATGGGGGGAGGGCCATGAG 574262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339605198664963