Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq123480 165 1e-35 >seq123480 Length=9600728 Score = 165 bits (182), Expect = 1e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || || | |||||||||||| ||| |||| || ||||| |||||| Sbjct 4247695 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 4247636 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| ||||| || || || |||||||| |||||||||||||| ||||| Sbjct 4247635 CTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 4247576 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 | || || || ||||| | || | ||| || || | || || |||||||| | Sbjct 4247575 ACTTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAACATGAGGCGGGTAGATCATTTCG 4247516 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||| || || | ||| |||| Sbjct 4247515 ACCTGCGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAATCATCT 4247467 Score = 165 bits (182), Expect = 1e-35 Identities = 221/305 (72%), Gaps = 2/305 (1%) Strand=Plus/Minus Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732 |||| | ||| | || || ||||| ||||| ||||| || |||| |||||||| || | Sbjct 4249380 GAACACTGAATGAGGTAAAGGGACAGCCTTTCACGTTACTGCAGATGAGAGACTGAATTG 4249321 Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792 ||| | |||| ||| ||| || || ||||| ||||| ||||| || |||||||| Sbjct 4249320 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCGAAAGTGCTAGGCTTCCAGTACT 4249261 Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCT-CG 8851 | || ||||| || || |||| || ||||| ||||| || || || || |||| | Sbjct 4249260 CGGGAGAGCATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGTGCTCC-AGCTTCT 4249202 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | ||| |||| || |||||||||| ||||||||||| || |||| | ||| || Sbjct 4249201 ACCATGGTCTCCCCAAAGATGGCGTCTGGACGGGGCTTCTCTACCAGAAGGGCGGGATAA 4249142 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971 ||||||| || || |||||||| || || || | || ||||| |||||||| ||| Sbjct 4249141 AACTCCATGGCATCTATGTCTCCATAGAGCGCTTCTAACTCTGCAGCCATTTCCTTCTCT 4249082 Query 8972 CCTGT 8976 ||||| Sbjct 4249081 CCTGT 4249077 Score = 107 bits (118), Expect = 3e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 ||| |||||||| | ||| |||||||| || || ||||| | ||||| ||| | || Sbjct 4246680 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 4246621 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 4246620 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 4246561 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 ||| |||| | || | ||||| ||||| |||||| Sbjct 4246560 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAAC 4246522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707387343142640