Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq116943 118 1e-21 seq123548 114 1e-20 seq123465 82.4 8e-11 >seq116943 Length=20458 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | ||||| ||||||| ||||||||| || | | Sbjct 11295 AGCTCCTCCTCAGTTTCAAACTGAGCAAGAACAGCTCCCACTGAAGTACAGGATATCTGA 11354 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| | ||| ||||||||||| ||||| || |||| |||||||||||| Sbjct 11355 CTCAATGTCCAATTCTCTGAGTCTTCAGAAAAATAAAAACACTTATTCCCAAATCCAATC 11414 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||||||| || ||||| Sbjct 11415 CATCCTTTTGGGCAGGTGACATA 11437 >seq123548 Length=8952071 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | ||||| ||||||| |||| |||| |||| | Sbjct 439995 AGCTCCTCCTCAGTTTCAAACTGAGCAAGAACAGCTCCCACTGAAATACAGGATGTCTGA 440054 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| ||||| ||||||||||| ||||| || ||| |||||||||||| Sbjct 440055 CTGAATGTCCAATTCTTTGAGTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATC 440114 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||||||| | ||||| Sbjct 440115 CATCCTTTTGGGCAGCTGACATA 440137 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | ||||| ||| ||| ||||||||| || | | Sbjct 398064 AGCTCCTCCTCAGTTTCAAACTGAGCAAGAACAGCTTCCAGTGAAGTACAGGATATCTGA 398123 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| | ||| ||||||||||| ||||| || |||| |||||||||||| Sbjct 398124 CTCAATGTCCAATTCTCTGACTCTTCAGAAAAATAAAAACACTTATTCCCAAATCCAATC 398183 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||||||| || || || Sbjct 398184 CATCCTTTTGGGCAGGTGACGTA 398206 Score = 102 bits (112), Expect = 9e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 130665 GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAA 130724 ||||||| | | |||| ||| ||||||||||||| ||||| | | |||||||| Sbjct 471461 GTTTCAAACTGAGCAAGGACAGCTTCCAATGAAGTACAGAATGTCTGACTGAATGTCCAG 471520 Query 130725 TTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGG 130784 || ||| ||||| ||||| ||||| |||||| ||||||||| |||||||| |||| | Sbjct 471521 TTCCTTGTGTCTTCCGAAAAATAAAAACATTTACTTCCAAATCCTATCCATCCTTTTGAG 471580 Query 130785 CAAGTAACATA 130795 || | |||||| Sbjct 471581 CAGGGAACATA 471591 >seq123465 Length=11796121 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 21168 TTGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | |||||| | ||||| || | ||||| || || || || || ||||| | Sbjct 5864364 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 5864305 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 | |||| ||| ||| ||||||||| |||||||||||||| Sbjct 5864304 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTC 5864265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531046893104440