Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq123442 140 4e-28 seq123465 129 7e-25 seq123636 102 1e-16 seq123609 82.4 9e-11 >seq123442 Length=2042734 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 170365 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 170424 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 170425 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 170484 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 170485 CTGTTTCTTACACCATA 170501 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||| ||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 181459 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 181518 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 181519 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 181578 Query 63332 CGGTTCCAAGTATATGGC 63349 ||||||| ||| || || Sbjct 181579 AGGTTCCAGGTAAATAGC 181596 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 175057 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 175116 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||||||||| ||||||| |||||| | ||| || || | || ||||| || | Sbjct 175117 AATAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGGT 175176 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62752 | | | |||||||| || || || | ||||| || ||||| || || || | ||| Sbjct 175177 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 175234 >seq123465 Length=11796121 Score = 129 bits (142), Expect = 7e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| ||||| |||||||||||||| || ||||| || || || || | Sbjct 5862561 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 5862502 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || || ||||||||||| ||||| ||||||||||||| Sbjct 5862501 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 5862442 Query 33446 C 33446 | Sbjct 5862441 C 5862441 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 5860822 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 5860763 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| | |||||||||||||| |||||| | ||| || || Sbjct 5860762 AATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTCTTGGCTAAACCGCTC 5860703 Query 33684 CGCC 33687 | || Sbjct 5860702 CACC 5860699 >seq123636 Length=25235462 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || || || |||||||| |||||||| ||||| || || | || || Sbjct 19811099 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 19811040 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| || |||||||| Sbjct 19811039 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGC 19810981 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 ||| ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| Sbjct 19801510 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 19801451 Query 33861 ATATTGGATTGGGAAAATAACAAATC 33886 || |||||||| || || ||||||| Sbjct 19801450 GTACTGGATTGGAAAGATGACAAATC 19801425 >seq123609 Length=20239142 Score = 82.4 bits (90), Expect = 9e-11 Identities = 174/257 (68%), Gaps = 12/257 (5%) Strand=Plus/Minus Query 31047 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCT 31104 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 16274393 TCCAGTGGAACCAAAGCCTCTTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 16274336 Query 31105 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31164 || | |||||| ||| |||| |||| ||| || ||||| || |||| | || || Sbjct 16274335 TCTATTTCTGGGTAAAATATCCGTTCATAAATGAGCTGTGCAATTCAAACTT-----TTG 16274281 Query 31165 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31224 || | |||| | ||| ||| ||||| || || || | || || ||||||||| Sbjct 16274280 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGGCAACACCAACATTCCCTCTATAATCT 16274221 Query 31225 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 31281 || ||||| ||||| |||||| ||| || | || | | || ||||| | |||| Sbjct 16274220 TCATCTATGACACCAGCTCCTACATCTATGAAGGGTTCTGCTGCCAAGCCAGAACGAGGA 16274161 Query 31282 GCTATTCTACCATAGCA 31298 || | ||| |||||||| Sbjct 16274160 GCCACTCTTCCATAGCA 16274144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621947128351960