Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq123442 140 4e-28 seq123465 123 3e-23 seq123636 102 1e-16 >seq123442 Length=2042734 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 170365 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 170424 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 170425 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 170484 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 170485 CTGTTTCTTACACCATA 170501 Score = 109 bits (120), Expect = 7e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| || ||||||||||| | || || ||||| || || || || || | Sbjct 193906 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 193965 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 193966 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 194025 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAG 63977 ||| || || || || ||| | |||| |||||||| |||||||||| Sbjct 194026 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACCTTCATAG 194073 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 175057 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 175116 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 ||||||||||||| ||||||| |||||| | ||| || || | || ||||| || | Sbjct 175117 AATAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGGT 175176 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62607 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| Sbjct 175177 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 175234 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||| ||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 181459 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 181518 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 181519 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 181578 Query 63187 CGGTTCCAAGTATATGGC 63204 ||||||| ||| || || Sbjct 181579 AGGTTCCAGGTAAATAGC 181596 >seq123465 Length=11796121 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 5862561 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 5862502 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| |||||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 5862501 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 5862442 Query 32803 C 32803 | Sbjct 5862441 C 5862441 Score = 105 bits (116), Expect = 8e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 5860822 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 5860763 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 ||||| || || ||||| || | |||||||||||||| |||||| Sbjct 5860762 AATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTCT 5860717 >seq123636 Length=25235462 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 19811099 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 19811040 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 19811039 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGC 19810981 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 19801509 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 19801450 Query 33219 TATTGAATTGGAAAAATAACAAATC 33243 || || |||||||| || ||||||| Sbjct 19801449 TACTGGATTGGAAAGATGACAAATC 19801425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632614775107600