Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq123338 98.7 8e-16 seq123197 93.3 4e-14 seq123262 82.4 6e-11 seq77427 82.4 6e-11 >seq123338 Length=16093809 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || || || || Sbjct 10050756 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 10050697 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || ||||||||||| || || ||||| || Sbjct 10050696 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 10050637 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||||||||| ||| Sbjct 10050636 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 10050577 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 10050576 TTCACGAAGATCTGCAT 10050560 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || || || || Sbjct 10050984 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 10050925 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || |||||||| || || || ||||| || Sbjct 10050924 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTC 10050865 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 10050864 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 10050805 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 10050804 TTCACGAAGATCTGCAT 10050788 >seq123197 Length=3943935 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 114159 CCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA 114218 ||||| |||||||| |||| ||| | || || || ||||| |||||||| || || | Sbjct 831040 CCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGACAAA 831099 Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 |||| |||||| ||||| || || || |||| || | | ||||| |||||||| Sbjct 831100 GTACATCCATCTTCCAGTTGCTTTCCCGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATT 831159 Query 114279 CCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCC 114338 ||||| || || ||||| |||| | ||| || || || | || || || || Sbjct 831160 CCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCG 831219 Query 114339 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | || || || ||| | || || || ||||||||||| Sbjct 831220 AGAGTGATGGTCTTCCCCGTCCGGGTCTTCACGAAAATCTGCAT 831263 >seq123262 Length=1326122 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/229 (68%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 || |||||| |||||| | |||| ||| | || || || |||||||||||||| || Sbjct 348158 TAGCGCCACAAAGTCTCCACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 348099 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 || |||| | ||||| ||||| || ||||| |||| || ||| ||||| |||| Sbjct 348098 ACAAAGTATGTCCATCTTTCAGTTGCTTGCCAGCAAAGATCAG--TCTGCTGGTCAGGAG 348041 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||| | ||| || | ||||| |||| | ||| | || || | || || | Sbjct 348040 GAATTCTTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCAA 347981 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | || | | || || ||||||| || || ||||||||||| Sbjct 347980 CCTCGAGAGTGATGATGTTCCCTATCAGAGTCTTCACGAAAATCTGCAT 347932 >seq77427 Length=594 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/229 (68%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 || |||||| |||||| | |||| ||| | || || || |||||||||||||| || Sbjct 158 TAGCGCCACAAAGTCTCCACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 217 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 || |||| | ||||| ||||| || ||||| |||| || ||| ||||| |||| Sbjct 218 ACAAAGTATGTCCATCTTTCAGTTGCTTGCCAGCAAAGATCAG--TCTGCTGGTCAGGAG 275 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||| | ||| || | ||||| |||| | ||| | || || | || || | Sbjct 276 GAATTCTTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCAA 335 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | || | | || || ||||||| || || ||||||||||| Sbjct 336 CCTCGAGAGTGATGATGTTCCCTATCAGAGTCTTCACGAAAATCTGCAT 384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419476783448772