Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq123197 122 2e-22 seq123338 118 2e-21 seq123040 95.1 3e-14 seq121894 91.5 3e-13 seq123326 86.0 1e-11 >seq123197 Length=3943935 Score = 122 bits (134), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 288248 CACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGA 288307 |||| || ||||| | || ||||||| ||| || ||||| || || ||||| | | Sbjct 831038 CACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGACA 831097 Query 288308 GCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACG---CTGTTGAGAATCTG 288364 || | ||| ||||| | ||| ||||| || |||||||| | ||| | || | | Sbjct 831098 AAGTACATCCATCTTCCAGTTGCTTTCCCGCAAAGATCAGTCTTTTCTGGTCAGGA---G 831154 Query 288365 GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 | |||||||| ||||||||||| || || || || ||||||| | ||| | || | Sbjct 831155 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAA 831214 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| ||||| |||||||| ||| | ||||| ||||| |||||||| Sbjct 831215 CCTCGAGAGTGATGGTCTTCCCCGTCCGGGTCTTCACGAAAATCTGCAT 831263 >seq123338 Length=16093809 Score = 118 bits (130), Expect = 2e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || ||||| ||| Sbjct 10050750 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 10050691 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || |||||||| Sbjct 10050690 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 10050631 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| || || ||| Sbjct 10050630 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACG 10050571 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 10050570 AAGATCTGCATTTTG 10050556 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || || || ||| Sbjct 10050978 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 10050919 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || || ||| || || || ||||||||||| || || |||||| Sbjct 10050918 ATGAGCCTCTGCTGG---TCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTCACG 10050862 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | || || || || ||||| ||||| |||||||| ||||| Sbjct 10050861 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 10050802 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 10050801 ACGAAGATCTGCAT 10050788 >seq123040 Length=253963 Score = 95.1 bits (104), Expect = 3e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || ||||| | || || || || ||||| || | ||| || | || || || || Sbjct 221156 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCC 221097 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 ||||||||||| || || |||||||| || || | || || | || || || || ||| Sbjct 221096 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCCTGGGCTCCACCTCCAGGGTG 221037 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || ||||| |||||||| ||||| ||||| ||||||||| || Sbjct 221036 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 220995 >seq121894 Length=21300 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||||||||||||||| || || || || |||||||| | ||| | || Sbjct 20650 GGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCA 20709 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| | ||||| |||||||||| ||||| |||||||| Sbjct 20710 ACCTCGAGAGTGATGATGTTCCCTATCAGAGTCTTCACGAAAATCTGCAT 20759 >seq123326 Length=4138734 Score = 86.0 bits (94), Expect = 1e-11 Identities = 117/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 288315 TCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCTGGGATTCC 288371 ||| ||||| | ||| || || || |||||||| | |||| | || | || ||||| Sbjct 3575535 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA---GGAATTCC 3575591 Query 288372 TTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAG 288431 ||| ||||||||||| || || || || |||||| | | ||| | || || | || Sbjct 3575592 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCCACCTTGAC 3575651 Query 288432 CGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| |||||| | ||||| ||||| | ||| |||||||| Sbjct 3575652 AGTGATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 3575693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177713252511218