Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq123338 104 3e-17 seq123504 91.5 2e-13 seq123318 91.5 2e-13 seq123149 91.5 2e-13 seq123220 89.7 6e-13 seq122981 89.7 6e-13 seq123463 86.0 7e-12 seq104493 86.0 7e-12 seq123625 82.4 8e-11 >seq123338 Length=16093809 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || |||||||||| ||||| || | || || |||||||| || || || Sbjct 10050979 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 10050920 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | ||||||||||| || | || |||||| ||| ||| || || | | Sbjct 10050919 GATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTT 10050860 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 10050859 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 10050800 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 10050799 GAAGATCTGCAT 10050788 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 15446534 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 15446475 Query 57067 TACTACCGAGGATTGA 57082 ||||| |||||| ||| Sbjct 15446474 TACTAACGAGGAGTGA 15446459 >seq123504 Length=3144647 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 3060625 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 3060684 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 3060685 ATACTAACGAGGA 3060697 >seq123318 Length=9803767 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4060806 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4060747 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 4060746 TACTAACGAGGAT 4060734 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | || | |||| |||| ||| |||||| || || ||||| |||| | Sbjct 4075224 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4075165 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || ||||| || || || || || || | ||||||||| | || Sbjct 4075164 AGGGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 4075105 Query 42102 ACGCTCTCCTTGTCCATG-ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || ||| | | || || || |||| || | | ||||| || | ||||| Sbjct 4075104 ATGC-CTTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 4075046 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || | ||||||||||| || || || ||||| |||||||| |||||| || Sbjct 4075045 CTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCATTGTC 4074994 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4063774 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4063715 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4063714 TACTAACGAGGA 4063703 >seq123149 Length=289317 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 160168 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 160227 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 160228 ATACTAACGAGGA 160240 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 106305 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 106246 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 106245 TACTAACGAGGA 106234 >seq123220 Length=2346150 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1299221 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1299162 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1299161 TACTAACGAGGA 1299150 >seq122981 Length=522162 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 516878 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAGGA 516820 >seq123463 Length=2538162 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||||||| |||||||||||||||||||||||| ||| ||||||||| Sbjct 1732038 CTCCCCGTCGGGGAATCGAATCCTGGTCTCCCGCGTGACAGGCGGGGATATTCACCACTA 1731979 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1731978 TACTAACGAGGA 1731967 >seq104493 Length=64893 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 ||||| | || | |||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 35623 CTCCTGGTCAGGGAATCAAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 35564 Query 57067 TACTA 57071 ||||| Sbjct 35563 TACTA 35559 >seq123625 Length=6010287 Score = 82.4 bits (90), Expect = 8e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||| ||||||||||||||| |||||||||||| ||||| ||||||| Sbjct 1248065 AATCGAACCCCGGTCTTCCGCGTGACAGGCGGGGATACTCACCACTGTACTAACGAGGAT 1248124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542340732961040