Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq123338 140 3e-28 seq123318 122 9e-23 seq82137 116 4e-21 seq123197 113 4e-20 seq123040 105 7e-18 seq123262 98.7 1e-15 seq77427 98.7 1e-15 seq123326 87.8 2e-12 >seq123338 Length=16093809 Score = 140 bits (154), Expect = 3e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | | ||||| | ||||| ||||||||||| Sbjct 10050756 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 10050697 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || ||||| ||||| || || || || || ||| Sbjct 10050696 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 10050637 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | || | |||||||||||||| ||| Sbjct 10050636 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 10050577 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 10050576 TTCACGAAGATCTGCATTTT 10050557 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | ||||| ||||| || ||||||||||| | | ||||| | || Sbjct 10051000 AAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 10050941 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||||||| | ||||||| |||||||||||| ||||| || || || || Sbjct 10050940 TTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATC 10050881 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || ||| | || |||| || ||||| || | || | ||| Sbjct 10050880 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 10050821 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || ||||| || ||||| Sbjct 10050820 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 10050788 >seq123318 Length=9803767 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | |||||| | ||||| ||||| || ||| Sbjct 4075422 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGTTTCCCG 4075363 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || || ||||| ||||| || || ||| Sbjct 4075362 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 4075303 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | || | ||||||||||||||| || Sbjct 4075302 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 4075243 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 4075242 TTCACGAAGATCTGCAT 4075226 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | |||||| | ||||| ||||| || ||| Sbjct 4075194 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGTTTCCCG 4075135 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || ||||||||||||||||| || ||| Sbjct 4075134 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTCCCCTTG 4075075 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | ||| | ||| || || || | || Sbjct 4075074 ACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTTTACCAGTGAGGGTC 4075015 Query 64427 TTTACGAAAATTTGCATT 64444 || || || || |||||| Sbjct 4075014 TTCACAAAGATCTGCATT 4074997 >seq82137 Length=2930 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | |||||| | ||||| ||||| || ||| Sbjct 297 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGTTTCCCG 238 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || || ||||| ||||| || || ||| Sbjct 237 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 178 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | || | ||||||||||||||| || Sbjct 177 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 118 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 117 TTCACGAAGATCTGCAT 101 >seq123197 Length=3943935 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64220 CCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG 64279 || || | ||| | ||||||||||| || || || ||||| |||||||| || | | Sbjct 831040 CCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGACAAA 831099 Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATT 64339 || | | ||||| || ||||| || ||| | || || | | |||||| ||||||||| Sbjct 831100 GTACATCCATCTTCCAGTTGCTTTCCCGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATT 831159 Query 64340 CCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCT 64399 ||||| || || || || || ||||||| || |||||||| || || || || Sbjct 831160 CCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCG 831219 Query 64400 ACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | ||| | |||||| || ||| || || |||||||| ||||| || Sbjct 831220 AGAGTGATGGTCTTCCCCGTCCGGGTCTTCACGAAAATCTGCATCTT 831266 >seq123040 Length=253963 Score = 105 bits (116), Expect = 7e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| ||||||||||||||| | ||||||| ||||||||| || ||||| || || || Sbjct 221153 TCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTA 221094 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || || ||| || ||| | || || | || ||||| || | || | | Sbjct 221093 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCCTGGGCTCCACCTCCAGGGTGATG 221034 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||||||||||| || || ||||| || |||||||| Sbjct 221033 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 220996 >seq123262 Length=1326122 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||||||||||| || || || |||||||||||||| || | | || | | |||| Sbjct 348139 CACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTT 348080 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 || |||||||| ||| | || || ||||||||| |||||||||| ||| || | || Sbjct 348079 CAGTTGCTTGCCAGCAAAGATCAG--TCTGCTGGTCAGGAGGAATTCTTTCCTTATTCTG 348022 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||||||| || | |||||| || || || || | ||| | | | || Sbjct 348021 GATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCAACCTCGAGAGTGATGATGTT 347962 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || ||| ||| || |||||||| ||||| || Sbjct 347961 CCCTATCAGAGTCTTCACGAAAATCTGCATCTT 347929 >seq77427 Length=594 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||||||||||| || || || |||||||||||||| || | | || | | |||| Sbjct 177 CACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTT 236 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 || |||||||| ||| | || || ||||||||| |||||||||| ||| || | || Sbjct 237 CAGTTGCTTGCCAGCAAAGATCAG--TCTGCTGGTCAGGAGGAATTCTTTCCTTATTCTG 294 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||||||| || | |||||| || || || || | ||| | | | || Sbjct 295 GATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCAACCTCGAGAGTGATGATGTT 354 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || ||| ||| || |||||||| ||||| || Sbjct 355 CCCTATCAGAGTCTTCACGAAAATCTGCATCTT 387 >seq123326 Length=4138734 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| || |||||||| ||| | || || | |||||||| |||||||||||||| || Sbjct 3575539 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTA 3575598 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || || ||||||| || |||||| || ||||| | ||||| | | Sbjct 3575599 TCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCCACCTTGACAGTGATG 3575658 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| | |||| || || | |||||| ||||| || Sbjct 3575659 GTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTT 3575696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498842676483640